rnje30c_l17.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGACCTACATATATATCCAGAAATGTTTTGCCACCTGAGACCTATGAGGAGGTTGTGTC TAGGGAAGATATTTCCATACTGGTTTCTCTGCTCAAGAGCTTTATCAGGAGCTGAAGCAG TAAATGCCTTAAGACCATTCTACTTTGCTGTACATCCAGATTTCTTTGGACAGCACCCAA GGGAAAGGGAAGTCAATGAAAATTCTCTTAAGAGGTTAAGTGCCTACTTAGAAAATCTCC AGAAACCAGGCTCCAAGTCTTTGAAACCAACTCAGCTTATGTTTTATGTAAGAGAAACAG ACCAGAATTCCTCTGAGGGCCAGGAACACTTCACCACTTCTGTTTATCTGTTGAACATAT CCAAAGCTCGAATACTAATGTGCATTCCCAGCCTCTCAAGAAGGCCCAAAGGATGTCTGA CAGGCCCATCAAATGGGACAAGTCCTACTACTCCTTTACTGGATTCAAAGACCCTGATGA AGACCTCGAGCAAGTCTGGAGAATGGAAACAACCCTCACGTATATCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGACCTACATATATATCCAGAAATGTTTTGCCACCTGAGACCTATGAGGAGGTTGTGTC TAGGGAAGATATTTCCATACTGGTTTCTCTGCTCAAGAGCTTTATCAGGAGCTGAAGCAG TAAATGCCTTAAGACCATTCTACTTTGCTGTACATCCAGATTTCTTTGGACAGCACCCAA GGGAAAGGGAAGTCAATGAAAATTCTCTTAAGAGGTTAAGTGCCTACTTAGAAAATCTCC AGAAACCAGGCTCCAAGTCTTTGAAACCAACTCAGCTTATGTTTTATGTAAGAGAAACAG ACCAGAATTCCTCTGAGGGCCAGGAACACTTCACCACTTCTGTTTATCTGTTGAACATAT CCAAAGCTCGAATACTAATGTGCATTCCCAGCCTCTCAAGAAGGCCCAAAGGATGTCTGA CAGGCCCATCAAATGGGACAAGTCCTACTACTCCTTTACTGGATTCAAAGACCCTGATGA AGACCTCGAGCAAGTCTGGAGAATGGAAACAACCCTCACGTATATCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 376-495, - strand, RNAz p=0.702465 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 376-495, - strand, RNAz p=0.702465 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 51-189, gnl|bosTau2|chr22 (12588634-12588496) | |
| 51-189, gnl|Hg17|chr3 (44374235-44374373) | |
| 51-189, gnl|Mm7|chr9 (122517154-122517292) | |
| 337-523, gnl|bosTau2|chr22 (12582018-12581832) | |
| 337-523, gnl|canFam2|chr23 (4981693-4981494) | |
| 337-523, gnl|danRer3|chrUn (171874333-171874131) | |
| 337-523, gnl|dasNov1|scaffold_36198 (5068-4869) | |
| 337-523, gnl|echTel1|scaffold_231085 (6315-6514) | |
| 337-523, gnl|fr1|chrUn (96458589-96458796) | |
| 337-523, gnl|galGal2|chr2 (39736479-39736286) | |
| 337-523, gnl|hg17|chr3 (44384010-44384209) | |
| 337-523, gnl|Hg17|chr3 (44384022-44384208) | |
| 337-523, gnl|loxAfr1|scaffold_6196 (303-104) | |
| 337-523, gnl|mm7|chr9 (122524230-122524429) | |
| 337-523, gnl|Mm7|chr9 (122524242-122524428) | |
| 337-523, gnl|monDom2|scaffold_7 (88375674-88375475) | |
| 337-523, gnl|oryCun1|scaffold_179318 (46848-46680) | |
| 337-523, gnl|panTro1|chr2 (45679050-45679249) | |
| 337-523, gnl|rheMac2|chr2 (92234803-92234604) | |
| 337-523, gnl|rn3|chr8 (127538996-127539195) | |
| 337-523, gnl|tetNig1|chrUn_random (32248415-32248215) | |
| 337-523, gnl|xenTro1|scaffold_319 (1066994-1067193) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-189, gnl|bosTau2|chr22 (12588634-12588496) | |
| 51-189, gnl|Hg17|chr3 (44374235-44374373) | |
| 51-189, gnl|Mm7|chr9 (122517154-122517292) | |
| 337-523, gnl|bosTau2|chr22 (12582018-12581832) | |
| 337-523, gnl|canFam2|chr23 (4981693-4981494) | |
| 337-523, gnl|danRer3|chrUn (171874333-171874131) | |
| 337-523, gnl|dasNov1|scaffold_36198 (5068-4869) | |
| 337-523, gnl|echTel1|scaffold_231085 (6315-6514) | |
| 337-523, gnl|fr1|chrUn (96458589-96458796) | |
| 337-523, gnl|galGal2|chr2 (39736479-39736286) | |
| 337-523, gnl|hg17|chr3 (44384010-44384209) | |
| 337-523, gnl|Hg17|chr3 (44384022-44384208) | |
| 337-523, gnl|loxAfr1|scaffold_6196 (303-104) | |
| 337-523, gnl|mm7|chr9 (122524230-122524429) | |
| 337-523, gnl|Mm7|chr9 (122524242-122524428) | |
| 337-523, gnl|monDom2|scaffold_7 (88375674-88375475) | |
| 337-523, gnl|oryCun1|scaffold_179318 (46848-46680) | |
| 337-523, gnl|panTro1|chr2 (45679050-45679249) | |
| 337-523, gnl|rheMac2|chr2 (92234803-92234604) | |
| 337-523, gnl|rn3|chr8 (127538996-127539195) | |
| 337-523, gnl|tetNig1|chrUn_random (32248415-32248215) | |
| 337-523, gnl|xenTro1|scaffold_319 (1066994-1067193) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) |