rnlu1809b_a18.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGATTCTAACCCCATGGTGGTAGCAAATGCAGTGGCGGCCCTCTCCGAGATTGCTGAG TCTCACCCCAGCAGCAACCTGCTTGACCTGAACCCGCAGTCCATTAACAAGCTGCTGACA GCCCTGAATGAGTGCACTGAGTGGGGCCAGATCTTCATTCTGGACTGCCTGGCCAACTAC ACTCCCAAGGATGACCGAGAGGCCCAGAGCATCTGCGAGCGGGTCACACCCAGGCTTTCC CACGCCAACTCTGCTGTGGTGCTGTCTGCTGTGAAGGTGCTGATGAAGTTCATGGAGATG CTGTCCAAGGACCTAGACTACTATGGCACGCTGCTCAAGAAGCTGGCCCCGCCCCTGGTC ACACTGTTGTCAGCGGAGCCTGAGCTGCAGTATGTGGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGATTCTAACCCCATGGTGGTAGCAAATGCAGTGGCGGCCCTCTCCGAGATTGCTGAG TCTCACCCCAGCAGCAACCTGCTTGACCTGAACCCGCAGTCCATTAACAAGCTGCTGACA GCCCTGAATGAGTGCACTGAGTGGGGCCAGATCTTCATTCTGGACTGCCTGGCCAACTAC ACTCCCAAGGATGACCGAGAGGCCCAGAGCATCTGCGAGCGGGTCACACCCAGGCTTTCC CACGCCAACTCTGCTGTGGTGCTGTCTGCTGTGAAGGTGCTGATGAAGTTCATGGAGATG CTGTCCAAGGACCTAGACTACTATGGCACGCTGCTCAAGAAGCTGGCCCCGCCCCTGGTC ACACTGTTGTCAGCGGAGCCTGAGCTGCAGTATGTGGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 57-176, - strand, RNAz p=0.824429 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 57-176, - strand, RNAz p=0.824429 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 80-158, - strand, RNAmicro p=0.957545 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 18-209, gnl|bosTau2|chr17 (39376798-39376607) | |
| 18-209, gnl|canFam2|chr26 (25690419-25690641) | |
| 18-209, gnl|canFam2|chr26 (25690630-25690438) | |
| 18-209, gnl|danRer3|chr5 (14304430-14304223) | |
| 18-209, gnl|danRer3|chr5 (67144344-67144154) | |
| 18-209, gnl|dasNov1|scaffold_8146 (98883-99105) | |
| 18-209, gnl|dasNov1|scaffold_8146 (99094-98902) | |
| 18-209, gnl|echTel1|scaffold_133722 (123-312) | |
| 18-209, gnl|echTel1|scaffold_133722 (315-134) | |
| 18-209, gnl|fr1|chrUn (2108548-2108326) | |
| 18-209, gnl|fr1|chrUn (196279539-196279729) | |
| 18-209, gnl|galGal2|chr15 (10996410-10996194) | |
| 18-209, gnl|galGal2|chr15 (10996199-10996391) | |
| 18-209, gnl|hg17|chr22 (28076962-28077184) | |
| 18-209, gnl|hg17|chr22 (30852846-30853038) | |
| 18-209, gnl|Hg17|chr22 (28077160-28076969) | |
| 18-209, gnl|loxAfr1|scaffold_8358 (38968-39170) | |
| 18-209, gnl|loxAfr1|scaffold_8358 (39159-38968) | |
| 18-209, gnl|mm7|chr11 (4970218-4969997) | |
| 18-209, gnl|mm7|chr11 (4970007-4970199) | |
| 18-209, gnl|Mm7|chr11 (4970018-4970209) | |
| 18-209, gnl|monDom2|scaffold_89 (3146271-3146482) | |
| 18-209, gnl|monDom2|scaffold_89 (3146482-3146290) | |
| 18-209, gnl|oryCun1|scaffold_136033 (1414-1192) | |
| 18-209, gnl|oryCun1|scaffold_136033 (1203-1395) | |
| 18-209, gnl|panTro1|chr23 (31020846-31021038) | |
| 18-209, gnl|panTro1|chr23_random (8694686-8694908) | |
| 18-209, gnl|rheMac2|chr10 (73184426-73184648) | |
| 18-209, gnl|rheMac2|chr10 (76024367-76024559) | |
| 18-209, gnl|rn3|chr14 (85691540-85691319) | |
| 18-209, gnl|rn3|chr14 (85691329-85691521) | |
| 18-209, gnl|tetNig1|chr12 (6674923-6674712) | |
| 18-209, gnl|tetNig1|chr7 (10216893-10217084) | |
| 18-209, gnl|xenTro1|scaffold_207 (425336-425537) | |
| 18-209, gnl|xenTro1|scaffold_38 (1037958-1037766) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 18-209, gnl|bosTau2|chr17 (39376798-39376607) | |
| 18-209, gnl|canFam2|chr26 (25690419-25690641) | |
| 18-209, gnl|canFam2|chr26 (25690630-25690438) | |
| 18-209, gnl|danRer3|chr5 (14304430-14304223) | |
| 18-209, gnl|danRer3|chr5 (67144344-67144154) | |
| 18-209, gnl|dasNov1|scaffold_8146 (98883-99105) | |
| 18-209, gnl|dasNov1|scaffold_8146 (99094-98902) | |
| 18-209, gnl|echTel1|scaffold_133722 (123-312) | |
| 18-209, gnl|echTel1|scaffold_133722 (315-134) | |
| 18-209, gnl|fr1|chrUn (2108548-2108326) | |
| 18-209, gnl|fr1|chrUn (196279539-196279729) | |
| 18-209, gnl|galGal2|chr15 (10996410-10996194) | |
| 18-209, gnl|galGal2|chr15 (10996199-10996391) | |
| 18-209, gnl|hg17|chr22 (28076962-28077184) | |
| 18-209, gnl|hg17|chr22 (30852846-30853038) | |
| 18-209, gnl|Hg17|chr22 (28077160-28076969) | |
| 18-209, gnl|loxAfr1|scaffold_8358 (38968-39170) | |
| 18-209, gnl|loxAfr1|scaffold_8358 (39159-38968) | |
| 18-209, gnl|mm7|chr11 (4970218-4969997) | |
| 18-209, gnl|mm7|chr11 (4970007-4970199) | |
| 18-209, gnl|Mm7|chr11 (4970018-4970209) | |
| 18-209, gnl|monDom2|scaffold_89 (3146271-3146482) | |
| 18-209, gnl|monDom2|scaffold_89 (3146482-3146290) | |
| 18-209, gnl|oryCun1|scaffold_136033 (1414-1192) | |
| 18-209, gnl|oryCun1|scaffold_136033 (1203-1395) | |
| 18-209, gnl|panTro1|chr23 (31020846-31021038) | |
| 18-209, gnl|panTro1|chr23_random (8694686-8694908) | |
| 18-209, gnl|rheMac2|chr10 (73184426-73184648) | |
| 18-209, gnl|rheMac2|chr10 (76024367-76024559) | |
| 18-209, gnl|rn3|chr14 (85691540-85691319) | |
| 18-209, gnl|rn3|chr14 (85691329-85691521) | |
| 18-209, gnl|tetNig1|chr12 (6674923-6674712) | |
| 18-209, gnl|tetNig1|chr7 (10216893-10217084) | |
| 18-209, gnl|xenTro1|scaffold_207 (425336-425537) | |
| 18-209, gnl|xenTro1|scaffold_38 (1037958-1037766) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |