Non-Coding RNA Search

rnlu1812b_g4.y1

Sequence:


               
               GCGGATGGTCCTGCACGAGTCACTGAAGGCCCTGAAGATGCGGGCGTGGGAGGAGAGGCA
GACCGAGCGGCTGCTGGAGCTGCTGACCACAGAGATCCTGCATCCCGACAGCCAGGCCCC
CAACGGGGTCAAGAGCCACTTCCTCGAGGTCTTCCTGGAGGAGCTGACCAAAGTGGGCGC
CGACGAGCTGACAGCGGACCAGAACCTCCGGCTCATCGAGCCTTTCTGCAGGGTGGCCGC
CCGGACCCAGGACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGATGGTCCTGCACGAGTCACTGAAGGCCCTGAAGATGCGGGCGTGGGAGGAGAGGCA
GACCGAGCGGCTGCTGGAGCTGCTGACCACAGAGATCCTGCATCCCGACAGCCAGGCCCC
CAACGGGGTCAAGAGCCACTTCCTCGAGGTCTTCCTGGAGGAGCTGACCAAAGTGGGCGC
CGACGAGCTGACAGCGGACCAGAACCTCCGGCTCATCGAGCCTTTCTGCAGGGTGGCCGC
CCGGACCCAGGACCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879821|ref|XP_590534.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879821|ref|XP_590534.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               56-187, gnl|bosTau2|chr1 (94304395-94304264)
               

               
               56-187, gnl|canFam2|chr31 (40071392-40071562)
               

               
               56-187, gnl|dasNov1|scaffold_41219 (834-666)
               

               
               56-187, gnl|echTel1|scaffold_263530 (8501-8669)
               

               
               56-187, gnl|fr1|chrUn (290311271-290311121)
               

               
               56-187, gnl|hg17|chr21 (44041699-44041867)
               

               
               56-187, gnl|Hg17|chr21 (44041729-44041860)
               

               
               56-187, gnl|mm7|chr10 (78060322-78060165)
               

               
               56-187, gnl|Mm7|chr10 (78060301-78060170)
               

               
               56-187, gnl|monDom2|scaffold_29 (10138394-10138535)
               

               
               56-187, gnl|oryCun1|scaffold_123453 (3964-3813)
               

               
               56-187, gnl|panTro1|chr22 (44162951-44163119)
               

               
               56-187, gnl|rheMac2|chr3 (2916345-2916177)
               

               
               56-187, gnl|rn3|chr20 (10601922-10602087)
               

               
               56-187, gnl|tetNig1|chrUn_random (110898736-110898856)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-187, gnl|bosTau2|chr1 (94304395-94304264)
               

               
               56-187, gnl|canFam2|chr31 (40071392-40071562)
               

               
               56-187, gnl|dasNov1|scaffold_41219 (834-666)
               

               
               56-187, gnl|echTel1|scaffold_263530 (8501-8669)
               

               
               56-187, gnl|fr1|chrUn (290311271-290311121)
               

               
               56-187, gnl|hg17|chr21 (44041699-44041867)
               

               
               56-187, gnl|Hg17|chr21 (44041729-44041860)
               

               
               56-187, gnl|mm7|chr10 (78060322-78060165)
               

               
               56-187, gnl|Mm7|chr10 (78060301-78060170)
               

               
               56-187, gnl|monDom2|scaffold_29 (10138394-10138535)
               

               
               56-187, gnl|oryCun1|scaffold_123453 (3964-3813)
               

               
               56-187, gnl|panTro1|chr22 (44162951-44163119)
               

               
               56-187, gnl|rheMac2|chr3 (2916345-2916177)
               

               
               56-187, gnl|rn3|chr20 (10601922-10602087)
               

               
               56-187, gnl|tetNig1|chrUn_random (110898736-110898856)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	56-187, gnl\|bosTau2\|chr1 (94304395-94304264)
	56-187, gnl\|canFam2\|chr31 (40071392-40071562)
	56-187, gnl\|dasNov1\|scaffold_41219 (834-666)
	56-187, gnl\|echTel1\|scaffold_263530 (8501-8669)
	56-187, gnl\|fr1\|chrUn (290311271-290311121)
	56-187, gnl\|hg17\|chr21 (44041699-44041867)
	56-187, gnl\|Hg17\|chr21 (44041729-44041860)
	56-187, gnl\|mm7\|chr10 (78060322-78060165)
	56-187, gnl\|Mm7\|chr10 (78060301-78060170)
	56-187, gnl\|monDom2\|scaffold_29 (10138394-10138535)
	56-187, gnl\|oryCun1\|scaffold_123453 (3964-3813)
	56-187, gnl\|panTro1\|chr22 (44162951-44163119)
	56-187, gnl\|rheMac2\|chr3 (2916345-2916177)
	56-187, gnl\|rn3\|chr20 (10601922-10602087)
	56-187, gnl\|tetNig1\|chrUn_random (110898736-110898856)