Non-Coding RNA Search

rnlu1812b_l13.y1

Sequence:


               
               GTGGCTCACTCCCGGGAGAATTGCAGACCCCAGGTTGAAGCTGAGCTGCCCACGGGTACT
GTGGGCAGCCCCGGAGGCCTGGAAAAGCAGGCTCCGTTGGGAAGCTTACCTGGAACCGTT
CCAGAAAGTTCCCCATCTCCTAACCAAAGAAACGGAAGAATAAATTCAGACCTAGTGATC
AGTGGATTAATGCATAAACCCCAACCTTTAGAGAATCAAGAGCGACAGACATCATCAGAC
ATCCTGGAGGAATTAATTGTTCAAGGAATAATACAAAGCCACAGCAAAGTCTTTAGAAAT
GGAGAATCATATGACGTCATGGTAAACGCTACTGAGAAGCCACTGAAAAAACCACCGGCC
AGGCTGAAAAAACTTAAGGTCAAAAAGGAAGTCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCTCACTCCCGGGAGAATTGCAGACCCCAGGTTGAAGCTGAGCTGCCCACGGGTACT
GTGGGCAGCCCCGGAGGCCTGGAAAAGCAGGCTCCGTTGGGAAGCTTACCTGGAACCGTT
CCAGAAAGTTCCCCATCTCCTAACCAAAGAAACGGAAGAATAAATTCAGACCTAGTGATC
AGTGGATTAATGCATAAACCCCAACCTTTAGAGAATCAAGAGCGACAGACATCATCAGAC
ATCCTGGAGGAATTAATTGTTCAAGGAATAATACAAAGCCACAGCAAAGTCTTTAGAAAT
GGAGAATCATATGACGTCATGGTAAACGCTACTGAGAAGCCACTGAAAAAACCACCGGCC
AGGCTGAAAAAACTTAAGGTCAAAAAGGAAGTCAAAGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               168-325, gnl|bosTau2|chr23 (35175017-35174860)
               

               
               168-325, gnl|canFam2|chr35 (19155260-19155509)
               

               
               168-325, gnl|dasNov1|scaffold_94663 (43653-43403)
               

               
               168-325, gnl|hg17|chr6 (17228744-17228998)
               

               
               168-325, gnl|Hg17|chr6 (17228815-17228972)
               

               
               168-325, gnl|loxAfr1|scaffold_134245 (1652-1889)
               

               
               168-325, gnl|mm7|chr13 (45771693-45771942)
               

               
               168-325, gnl|Mm7|chr13 (45771759-45771916)
               

               
               168-325, gnl|monDom2|scaffold_3 (106195954-106196169)
               

               
               168-325, gnl|oryCun1|scaffold_167439 (5143-4917)
               

               
               168-325, gnl|panTro1|chr5 (17601186-17601440)
               

               
               168-325, gnl|rheMac2|chr4 (17142865-17143120)
               

               
               168-325, gnl|rn3|chr17 (24351931-24351681)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-325, gnl|bosTau2|chr23 (35175017-35174860)
               

               
               168-325, gnl|canFam2|chr35 (19155260-19155509)
               

               
               168-325, gnl|dasNov1|scaffold_94663 (43653-43403)
               

               
               168-325, gnl|hg17|chr6 (17228744-17228998)
               

               
               168-325, gnl|Hg17|chr6 (17228815-17228972)
               

               
               168-325, gnl|loxAfr1|scaffold_134245 (1652-1889)
               

               
               168-325, gnl|mm7|chr13 (45771693-45771942)
               

               
               168-325, gnl|Mm7|chr13 (45771759-45771916)
               

               
               168-325, gnl|monDom2|scaffold_3 (106195954-106196169)
               

               
               168-325, gnl|oryCun1|scaffold_167439 (5143-4917)
               

               
               168-325, gnl|panTro1|chr5 (17601186-17601440)
               

               
               168-325, gnl|rheMac2|chr4 (17142865-17143120)
               

               
               168-325, gnl|rn3|chr17 (24351931-24351681)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	168-325, gnl\|bosTau2\|chr23 (35175017-35174860)
	168-325, gnl\|canFam2\|chr35 (19155260-19155509)
	168-325, gnl\|dasNov1\|scaffold_94663 (43653-43403)
	168-325, gnl\|hg17\|chr6 (17228744-17228998)
	168-325, gnl\|Hg17\|chr6 (17228815-17228972)
	168-325, gnl\|loxAfr1\|scaffold_134245 (1652-1889)
	168-325, gnl\|mm7\|chr13 (45771693-45771942)
	168-325, gnl\|Mm7\|chr13 (45771759-45771916)
	168-325, gnl\|monDom2\|scaffold_3 (106195954-106196169)
	168-325, gnl\|oryCun1\|scaffold_167439 (5143-4917)
	168-325, gnl\|panTro1\|chr5 (17601186-17601440)
	168-325, gnl\|rheMac2\|chr4 (17142865-17143120)
	168-325, gnl\|rn3\|chr17 (24351931-24351681)