Non-Coding RNA Search

rnlu1813b_o13.y1

Sequence:


               
               CGGAGAGCCTCCTGCTATCGCTGGAGCTGGCGTCGGGCAGTGGGCAGGGTCTCAGCCCAG
ACCGTCGGGCCTCTCTGCTCACCTCCCTTACGCTGGTTAAACGCGACTACCGTTTCGATC
GGGTCCTTTTCTGGGGCCGCATCCTCGGCCTCATCGCTGATTACTACATCGCGCAGGGCC
TGAGCGAGGACCAGCTTGCACCTCGCAAGACTCTATACAGCCTGAACTGCATGGAGTGGA
GCCTCTTGCCCCCCGCCACCGAGGAGATGGTGACACAGACATCCGTGGTGAAAGGCCGCT
TCATGGGGGACCCCTCGCATGAGTACGAGCACACTGAGCTGCAGAAGGTGAACGAGGGCG
AGAAGGTCTTTGAAGAAGAAGTAGTGGTCCAGATCAAAGAAGAGACCCGTTTGGTGTCCA
TCATTGATCAGATCGACAAGGCTGTGGCCGTCATCCCCCGAGGCGCCCTCTTTAAGACCC
CC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGAGCCTCCTGCTATCGCTGGAGCTGGCGTCGGGCAGTGGGCAGGGTCTCAGCCCAG
ACCGTCGGGCCTCTCTGCTCACCTCCCTTACGCTGGTTAAACGCGACTACCGTTTCGATC
GGGTCCTTTTCTGGGGCCGCATCCTCGGCCTCATCGCTGATTACTACATCGCGCAGGGCC
TGAGCGAGGACCAGCTTGCACCTCGCAAGACTCTATACAGCCTGAACTGCATGGAGTGGA
GCCTCTTGCCCCCCGCCACCGAGGAGATGGTGACACAGACATCCGTGGTGAAAGGCCGCT
TCATGGGGGACCCCTCGCATGAGTACGAGCACACTGAGCTGCAGAAGGTGAACGAGGGCG
AGAAGGTCTTTGAAGAAGAAGTAGTGGTCCAGATCAAAGAAGAGACCCGTTTGGTGTCCA
TCATTGATCAGATCGACAAGGCTGTGGCCGTCATCCCCCGAGGCGCCCTCTTTAAGACCC
CC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34874480|ref|XP_236938.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34874480|ref|XP_236938.2|

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               3-220, gnl|bosTau2|chr23 (16115106-16115323)
               

               
               3-220, gnl|hg17|chr6 (43720661-43720996)
               

               
               3-220, gnl|Hg17|chr6 (43720823-43721040)
               

               
               3-220, gnl|loxAfr1|scaffold_12986 (6062-6410)
               

               
               3-220, gnl|mm7|chr17 (44273701-44273372)
               

               
               3-220, gnl|Mm7|chr17 (44273543-44273326)
               

               
               3-220, gnl|monDom2|scaffold_0 (197876021-197875692)
               

               
               3-220, gnl|panTro1|chr5 (44320044-44320379)
               

               
               3-220, gnl|rheMac2|chr4 (43546237-43546576)
               

               
               3-220, gnl|rn3|chr9 (10402385-10402720)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-220, gnl|bosTau2|chr23 (16115106-16115323)
               

               
               3-220, gnl|hg17|chr6 (43720661-43720996)
               

               
               3-220, gnl|Hg17|chr6 (43720823-43721040)
               

               
               3-220, gnl|loxAfr1|scaffold_12986 (6062-6410)
               

               
               3-220, gnl|mm7|chr17 (44273701-44273372)
               

               
               3-220, gnl|Mm7|chr17 (44273543-44273326)
               

               
               3-220, gnl|monDom2|scaffold_0 (197876021-197875692)
               

               
               3-220, gnl|panTro1|chr5 (44320044-44320379)
               

               
               3-220, gnl|rheMac2|chr4 (43546237-43546576)
               

               
               3-220, gnl|rn3|chr9 (10402385-10402720)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	3-220, gnl\|bosTau2\|chr23 (16115106-16115323)
	3-220, gnl\|hg17\|chr6 (43720661-43720996)
	3-220, gnl\|Hg17\|chr6 (43720823-43721040)
	3-220, gnl\|loxAfr1\|scaffold_12986 (6062-6410)
	3-220, gnl\|mm7\|chr17 (44273701-44273372)
	3-220, gnl\|Mm7\|chr17 (44273543-44273326)
	3-220, gnl\|monDom2\|scaffold_0 (197876021-197875692)
	3-220, gnl\|panTro1\|chr5 (44320044-44320379)
	3-220, gnl\|rheMac2\|chr4 (43546237-43546576)
	3-220, gnl\|rn3\|chr9 (10402385-10402720)