Non-Coding RNA Search

rnlu1816b_h11.y1

Sequence:


               
               AAAAATACAGGCTTAAGAAAGGTTGTGTTATTTTCACCAAATATCTGTTTCTTTAATTTT
TAATGTTATCAACTATGCTCAACTCAGAGGATGTTGCTCTTTATTCCAGATTCCCTAGCC
ATTTTGTCCATCCTACCAGCTCTTCTTACTCCCCATCACTTGCGTTTCTTCACTTGCCAG
ATTCCCATTTAAATAAAACATATGTGAAGAACTGTGGAAGCAAGAAGTACTCCTATCCTA
GTCAGTCAGGCAATAAAGTCCTTCACTTACGAACTAGAACAATACAAAAGCTGCATACGT
CTACTTGTTGGCTGCAAGAGGTCCCTGGGAAACCTCAGCTGGAGAAAACCACAAAAAAGC
CACAGGTGCCAAGCCCCCAGTCAACAAAAGAAACTGGCTCGAAGGTTAAGGAAGAAAAGC
GATCTTATAGACAAATCATTATGGATGAACTTAAATATTATTACAATGGATTCTATCTGC
TGTGGATTGACACCAAAGTTGCTGCCAGAATGGTTTGGAGGCTGTTGCATGGACAGGTGC
TGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAATACAGGCTTAAGAAAGGTTGTGTTATTTTCACCAAATATCTGTTTCTTTAATTTT
TAATGTTATCAACTATGCTCAACTCAGAGGATGTTGCTCTTTATTCCAGATTCCCTAGCC
ATTTTGTCCATCCTACCAGCTCTTCTTACTCCCCATCACTTGCGTTTCTTCACTTGCCAG
ATTCCCATTTAAATAAAACATATGTGAAGAACTGTGGAAGCAAGAAGTACTCCTATCCTA
GTCAGTCAGGCAATAAAGTCCTTCACTTACGAACTAGAACAATACAAAAGCTGCATACGT
CTACTTGTTGGCTGCAAGAGGTCCCTGGGAAACCTCAGCTGGAGAAAACCACAAAAAAGC
CACAGGTGCCAAGCCCCCAGTCAACAAAAGAAACTGGCTCGAAGGTTAAGGAAGAAAAGC
GATCTTATAGACAAATCATTATGGATGAACTTAAATATTATTACAATGGATTCTATCTGC
TGTGGATTGACACCAAAGTTGCTGCCAGAATGGTTTGGAGGCTGTTGCATGGACAGGTGC
TGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61883771|ref|XP_593506.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61883771|ref|XP_593506.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               141-257, - strand, RNAz p=0.760564

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-257, - strand, RNAz p=0.760564

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-545, gnl|bosTau2|chr27 (21758607-21759159)
               

               
               1-545, gnl|Hg17|chr8 (38369091-38369652)
               

               
               1-545, gnl|Mm7|chr8 (24350741-24350211)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-545, gnl|bosTau2|chr27 (21758607-21759159)
               

               
               1-545, gnl|Hg17|chr8 (38369091-38369652)
               

               
               1-545, gnl|Mm7|chr8 (24350741-24350211)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-545, gnl\|bosTau2\|chr27 (21758607-21759159)
	1-545, gnl\|Hg17\|chr8 (38369091-38369652)
	1-545, gnl\|Mm7\|chr8 (24350741-24350211)