rnlu1823b_f15.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCCGGATGCCCTTCAGAATCCTTGCTACATCGGCACTCATGGGTGTGACACCAATGCA GCCTGTCGCCCCGGCCCCGGGACCCAGTTCACCTGCGAGTGCTCCATCGGCTTCCGAGGA GATGGACGCACCTGTTACGATATCAACGAGTGTTCAGAACAGCCTGCGGTGTGTGGGAGC CACGCCATCTGCAATAACCACCCAGGGACCTTCCGCTGCGAGTGTGTAGAGGGTTACCGA TTTTCAGAGGAGGGAACCTGTGTGGCTGTCGTGGACCAGCGTCCCATCAACTACTGTGAG ACCGGGCTCCATGACTGTGACATCCCCGAGCGGGCCCAGTGCATCTACCTGGGAGGGGCC TCGTACACCTGTTCCTGCCTGCCGGGCTTCTCTGGGGATGGCCGAGCCTGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCCGGATGCCCTTCAGAATCCTTGCTACATCGGCACTCATGGGTGTGACACCAATGCA GCCTGTCGCCCCGGCCCCGGGACCCAGTTCACCTGCGAGTGCTCCATCGGCTTCCGAGGA GATGGACGCACCTGTTACGATATCAACGAGTGTTCAGAACAGCCTGCGGTGTGTGGGAGC CACGCCATCTGCAATAACCACCCAGGGACCTTCCGCTGCGAGTGTGTAGAGGGTTACCGA TTTTCAGAGGAGGGAACCTGTGTGGCTGTCGTGGACCAGCGTCCCATCAACTACTGTGAG ACCGGGCTCCATGACTGTGACATCCCCGAGCGGGCCCAGTGCATCTACCTGGGAGGGGCC TCGTACACCTGTTCCTGCCTGCCGGGCTTCTCTGGGGATGGCCGAGCCTGC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 24-142, - strand, RNAz p=0.541038 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 24-142, - strand, RNAz p=0.541038 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-142, gnl|bosTau2|chr28 (4187155-4187014) | |
| 1-142, gnl|canFam2|chr4 (6977333-6977205) | |
| 1-142, gnl|danRer3|chr11 (42702402-42702529) | |
| 1-142, gnl|dasNov1|scaffold_3187 (15187-15059) | |
| 1-142, gnl|echTel1|scaffold_288157 (33999-34127) | |
| 1-142, gnl|fr1|chrUn (236164849-236164974) | |
| 1-142, gnl|galGal2|chr3 (34132696-34132570) | |
| 1-142, gnl|hg17|chr1 (232513407-232513535) | |
| 1-142, gnl|Hg17|chr1 (232513549-232513408) | |
| 1-142, gnl|mm7|chr13 (12826529-12826401) | |
| 1-142, gnl|Mm7|chr13 (12826385-12826526) | |
| 1-142, gnl|monDom2|scaffold_13 (49514078-49513950) | |
| 1-142, gnl|oryCun1|scaffold_175054 (51362-51234) | |
| 1-142, gnl|panTro1|chr1 (216343342-216343470) | |
| 1-142, gnl|rheMac2|chr1 (220996439-220996311) | |
| 1-142, gnl|rn3|chr17 (66897228-66897356) | |
| 1-142, gnl|tetNig1|chr17 (1916032-1915906) | |
| 1-142, gnl|xenTro1|scaffold_371 (74636-74762) | |
| 265-411, gnl|bosTau2|chr28 (4173320-4173174) | |
| 265-411, gnl|canFam2|chr4 (6988585-6988423) | |
| 265-411, gnl|danRer3|chr11 (42699465-42699619) | |
| 265-411, gnl|dasNov1|scaffold_3187 (26698-26538) | |
| 265-411, gnl|echTel1|scaffold_288157 (26672-26835) | |
| 265-411, gnl|fr1|chrUn (236163421-236163558) | |
| 265-411, gnl|galGal2|chr3 (34141986-34141835) | |
| 265-411, gnl|hg17|chr1 (232502751-232502914) | |
| 265-411, gnl|Hg17|chr1 (232502902-232502756) | |
| 265-411, gnl|loxAfr1|scaffold_35594 (5445-5282) | |
| 265-411, gnl|mm7|chr13 (12831888-12831725) | |
| 265-411, gnl|Mm7|chr13 (12831735-12831881) | |
| 265-411, gnl|monDom2|scaffold_13 (49533134-49532971) | |
| 265-411, gnl|oryCun1|scaffold_175054 (68209-68047) | |
| 265-411, gnl|panTro1|chr1 (216332689-216332852) | |
| 265-411, gnl|rheMac2|chr1 (221007604-221007441) | |
| 265-411, gnl|rn3|chr17 (66889720-66889883) | |
| 265-411, gnl|tetNig1|chr17 (1916997-1916860) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-142, gnl|bosTau2|chr28 (4187155-4187014) | |
| 1-142, gnl|canFam2|chr4 (6977333-6977205) | |
| 1-142, gnl|danRer3|chr11 (42702402-42702529) | |
| 1-142, gnl|dasNov1|scaffold_3187 (15187-15059) | |
| 1-142, gnl|echTel1|scaffold_288157 (33999-34127) | |
| 1-142, gnl|fr1|chrUn (236164849-236164974) | |
| 1-142, gnl|galGal2|chr3 (34132696-34132570) | |
| 1-142, gnl|hg17|chr1 (232513407-232513535) | |
| 1-142, gnl|Hg17|chr1 (232513549-232513408) | |
| 1-142, gnl|mm7|chr13 (12826529-12826401) | |
| 1-142, gnl|Mm7|chr13 (12826385-12826526) | |
| 1-142, gnl|monDom2|scaffold_13 (49514078-49513950) | |
| 1-142, gnl|oryCun1|scaffold_175054 (51362-51234) | |
| 1-142, gnl|panTro1|chr1 (216343342-216343470) | |
| 1-142, gnl|rheMac2|chr1 (220996439-220996311) | |
| 1-142, gnl|rn3|chr17 (66897228-66897356) | |
| 1-142, gnl|tetNig1|chr17 (1916032-1915906) | |
| 1-142, gnl|xenTro1|scaffold_371 (74636-74762) | |
| 265-411, gnl|bosTau2|chr28 (4173320-4173174) | |
| 265-411, gnl|canFam2|chr4 (6988585-6988423) | |
| 265-411, gnl|danRer3|chr11 (42699465-42699619) | |
| 265-411, gnl|dasNov1|scaffold_3187 (26698-26538) | |
| 265-411, gnl|echTel1|scaffold_288157 (26672-26835) | |
| 265-411, gnl|fr1|chrUn (236163421-236163558) | |
| 265-411, gnl|galGal2|chr3 (34141986-34141835) | |
| 265-411, gnl|hg17|chr1 (232502751-232502914) | |
| 265-411, gnl|Hg17|chr1 (232502902-232502756) | |
| 265-411, gnl|loxAfr1|scaffold_35594 (5445-5282) | |
| 265-411, gnl|mm7|chr13 (12831888-12831725) | |
| 265-411, gnl|Mm7|chr13 (12831735-12831881) | |
| 265-411, gnl|monDom2|scaffold_13 (49533134-49532971) | |
| 265-411, gnl|oryCun1|scaffold_175054 (68209-68047) | |
| 265-411, gnl|panTro1|chr1 (216332689-216332852) | |
| 265-411, gnl|rheMac2|chr1 (221007604-221007441) | |
| 265-411, gnl|rn3|chr17 (66889720-66889883) | |
| 265-411, gnl|tetNig1|chr17 (1916997-1916860) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) |