Non-Coding RNA Search

rnlu1824b_o24.y1

Sequence:


               
               CCGCAGACAGTGCTGGCGTGCCAGCTACCCCGCAAGCTGTACGATGTGGCCCAAAACACG
GGCGCCCACACATCCTCTGGCCTGGCCACTGCTGGCTTCCGCACAGCTAAGTACCTGGCA
GACGAGTGGTTCCAGAACTGCTACGCCCGCTACCATCAGGCCTTCGCCGACCGTGACCAG
TCAGAGCAGCAGCGCCACGAGAGCCAGCAGCTGGTGGCTGAGACGGAGGCGCTGGCACAG
CGCACACAGAAGGACTCCATGAAGAAGGTGGGTGAGCACCTGCAGGACACACACTGCTGG
AAGTCAGAGCTACAGCGCCACGTGGAAGAGCTGGTCGCAGAGACCGACCTGCTGCTGGCC
CAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCAGACAGTGCTGGCGTGCCAGCTACCCCGCAAGCTGTACGATGTGGCCCAAAACACG
GGCGCCCACACATCCTCTGGCCTGGCCACTGCTGGCTTCCGCACAGCTAAGTACCTGGCA
GACGAGTGGTTCCAGAACTGCTACGCCCGCTACCATCAGGCCTTCGCCGACCGTGACCAG
TCAGAGCAGCAGCGCCACGAGAGCCAGCAGCTGGTGGCTGAGACGGAGGCGCTGGCACAG
CGCACACAGAAGGACTCCATGAAGAAGGTGGGTGAGCACCTGCAGGACACACACTGCTGG
AAGTCAGAGCTACAGCGCCACGTGGAAGAGCTGGTCGCAGAGACCGACCTGCTGCTGGCC
CAGAA

Aligned organism(s): 44 entry(ies)

More info

Aligned organism(s): 44 entry(ies)

Help | Less info


               
               1-365, gnl|bosTau2|chr25 (921336-921700)
               

               
               1-365, gnl|canFam2|chr6 (42632687-42632236)
               

               
               1-365, gnl|canFam2|chr6 (42632679-42632236)
               

               
               1-365, gnl|canFam2|chr6 (42632679-42632236)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689131)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689117)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689094)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (233-689)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (246-689)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (246-689)
               

               
               1-365, gnl|fr1|chrUn (205788295-205787848)
               

               
               1-365, gnl|fr1|chrUn (205788288-205787858)
               

               
               1-365, gnl|fr1|chrUn (205788288-205787868)
               

               
               1-365, gnl|galGal2|chr14 (7601264-7600803)
               

               
               1-365, gnl|galGal2|chr14 (7601246-7600803)
               

               
               1-365, gnl|galGal2|chr14 (7601246-7600803)
               

               
               1-365, gnl|hg17|chr16 (1094967-1095408)
               

               
               1-365, gnl|Hg17|chr16 (1095455-1095110)
               

               
               1-365, gnl|hg17|chr4_random (485232-485659)
               

               
               1-365, gnl|hg17|chr4_random (258568-258995)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44426-44885)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44442-44885)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44442-44885)
               

               
               1-365, gnl|mm7|chr17 (23655355-23654908)
               

               
               1-365, gnl|mm7|chr17 (23655351-23654908)
               

               
               1-365, gnl|mm7|chr17 (23655351-23654908)
               

               
               1-365, gnl|Mm7|chr17 (23654852-23655216)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707052-12707504)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707061-12707504)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707061-12707504)
               

               
               1-365, gnl|panTro1|chr12 (97885779-97885336)
               

               
               1-365, gnl|panTro1|chr18 (1157014-1157455)
               

               
               1-365, gnl|panTro1|chrUn_random (64048865-64049294)
               

               
               1-365, gnl|rheMac2|chr15 (106348197-106347743)
               

               
               1-365, gnl|rheMac2|chr15 (106348186-106347743)
               

               
               1-365, gnl|rheMac2|chr15 (106348186-106347743)
               

               
               1-365, gnl|rn3|chr10 (14722541-14722094)
               

               
               1-365, gnl|rn3|chr10 (14722537-14722094)
               

               
               1-365, gnl|rn3|chr10 (14722537-14722094)
               

               
               1-365, gnl|tetNig1|chr18 (1913275-1912845)
               

               
               1-365, gnl|tetNig1|chr18 (1913275-1912863)
               

               
               1-365, gnl|xenTro1|scaffold_12 (1393806-1393363)
               

               
               1-365, gnl|xenTro1|scaffold_12 (1393806-1393363)
               

               
               1-365, gnl|xenTro1|scaffold_3402 (10990-11393)

Aligned organism(s): 44 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-365, gnl|bosTau2|chr25 (921336-921700)
               

               
               1-365, gnl|canFam2|chr6 (42632687-42632236)
               

               
               1-365, gnl|canFam2|chr6 (42632679-42632236)
               

               
               1-365, gnl|canFam2|chr6 (42632679-42632236)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689131)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689117)
               

               
               1-365, gnl|danRer3|chr1 (54688688-54689094)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (233-689)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (246-689)
               

               
               1-365, gnl|dasNov1|scaffold_232481 (246-689)
               

               
               1-365, gnl|fr1|chrUn (205788295-205787848)
               

               
               1-365, gnl|fr1|chrUn (205788288-205787858)
               

               
               1-365, gnl|fr1|chrUn (205788288-205787868)
               

               
               1-365, gnl|galGal2|chr14 (7601264-7600803)
               

               
               1-365, gnl|galGal2|chr14 (7601246-7600803)
               

               
               1-365, gnl|galGal2|chr14 (7601246-7600803)
               

               
               1-365, gnl|hg17|chr16 (1094967-1095408)
               

               
               1-365, gnl|Hg17|chr16 (1095455-1095110)
               

               
               1-365, gnl|hg17|chr4_random (485232-485659)
               

               
               1-365, gnl|hg17|chr4_random (258568-258995)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44426-44885)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44442-44885)
               

               
               1-365, gnl|loxAfr1|scaffold_21777 (44442-44885)
               

               
               1-365, gnl|mm7|chr17 (23655355-23654908)
               

               
               1-365, gnl|mm7|chr17 (23655351-23654908)
               

               
               1-365, gnl|mm7|chr17 (23655351-23654908)
               

               
               1-365, gnl|Mm7|chr17 (23654852-23655216)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707052-12707504)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707061-12707504)
               

               
               1-365, gnl|monDom2|scaffold_49 (12707061-12707504)
               

               
               1-365, gnl|panTro1|chr12 (97885779-97885336)
               

               
               1-365, gnl|panTro1|chr18 (1157014-1157455)
               

               
               1-365, gnl|panTro1|chrUn_random (64048865-64049294)
               

               
               1-365, gnl|rheMac2|chr15 (106348197-106347743)
               

               
               1-365, gnl|rheMac2|chr15 (106348186-106347743)
               

               
               1-365, gnl|rheMac2|chr15 (106348186-106347743)
               

               
               1-365, gnl|rn3|chr10 (14722541-14722094)
               

               
               1-365, gnl|rn3|chr10 (14722537-14722094)
               

               
               1-365, gnl|rn3|chr10 (14722537-14722094)
               

               
               1-365, gnl|tetNig1|chr18 (1913275-1912845)
               

               
               1-365, gnl|tetNig1|chr18 (1913275-1912863)
               

               
               1-365, gnl|xenTro1|scaffold_12 (1393806-1393363)
               

               
               1-365, gnl|xenTro1|scaffold_12 (1393806-1393363)
               

               
               1-365, gnl|xenTro1|scaffold_3402 (10990-11393)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-365, gnl\|bosTau2\|chr25 (921336-921700)
	1-365, gnl\|canFam2\|chr6 (42632687-42632236)
	1-365, gnl\|canFam2\|chr6 (42632679-42632236)
	1-365, gnl\|canFam2\|chr6 (42632679-42632236)
	1-365, gnl\|danRer3\|chr1 (54688688-54689131)
	1-365, gnl\|danRer3\|chr1 (54688688-54689117)
	1-365, gnl\|danRer3\|chr1 (54688688-54689094)
	1-365, gnl\|dasNov1\|scaffold_232481 (233-689)
	1-365, gnl\|dasNov1\|scaffold_232481 (246-689)
	1-365, gnl\|dasNov1\|scaffold_232481 (246-689)
	1-365, gnl\|fr1\|chrUn (205788295-205787848)
	1-365, gnl\|fr1\|chrUn (205788288-205787858)
	1-365, gnl\|fr1\|chrUn (205788288-205787868)
	1-365, gnl\|galGal2\|chr14 (7601264-7600803)
	1-365, gnl\|galGal2\|chr14 (7601246-7600803)
	1-365, gnl\|galGal2\|chr14 (7601246-7600803)
	1-365, gnl\|hg17\|chr16 (1094967-1095408)
	1-365, gnl\|Hg17\|chr16 (1095455-1095110)
	1-365, gnl\|hg17\|chr4_random (485232-485659)
	1-365, gnl\|hg17\|chr4_random (258568-258995)
	1-365, gnl\|loxAfr1\|scaffold_21777 (44426-44885)
	1-365, gnl\|loxAfr1\|scaffold_21777 (44442-44885)
	1-365, gnl\|loxAfr1\|scaffold_21777 (44442-44885)
	1-365, gnl\|mm7\|chr17 (23655355-23654908)
	1-365, gnl\|mm7\|chr17 (23655351-23654908)
	1-365, gnl\|mm7\|chr17 (23655351-23654908)
	1-365, gnl\|Mm7\|chr17 (23654852-23655216)
	1-365, gnl\|monDom2\|scaffold_49 (12707052-12707504)
	1-365, gnl\|monDom2\|scaffold_49 (12707061-12707504)
	1-365, gnl\|monDom2\|scaffold_49 (12707061-12707504)
	1-365, gnl\|panTro1\|chr12 (97885779-97885336)
	1-365, gnl\|panTro1\|chr18 (1157014-1157455)
	1-365, gnl\|panTro1\|chrUn_random (64048865-64049294)
	1-365, gnl\|rheMac2\|chr15 (106348197-106347743)
	1-365, gnl\|rheMac2\|chr15 (106348186-106347743)
	1-365, gnl\|rheMac2\|chr15 (106348186-106347743)
	1-365, gnl\|rn3\|chr10 (14722541-14722094)
	1-365, gnl\|rn3\|chr10 (14722537-14722094)
	1-365, gnl\|rn3\|chr10 (14722537-14722094)
	1-365, gnl\|tetNig1\|chr18 (1913275-1912845)
	1-365, gnl\|tetNig1\|chr18 (1913275-1912863)
	1-365, gnl\|xenTro1\|scaffold_12 (1393806-1393363)
	1-365, gnl\|xenTro1\|scaffold_12 (1393806-1393363)
	1-365, gnl\|xenTro1\|scaffold_3402 (10990-11393)