Non-Coding RNA Search

rnlu1828b_d1.y1

Sequence:


               
               TCCCAGTGAGCAGCACCATCTCGCGGGAGTACAACGAGCTGCTCACGGCCATCTCGGACA
GCGACTACTACACGGACGACATCACCCGGGCCTGCCTCTTCGTCCCGTCCATCGACGTGC
TCAACCAGCACACGCTCCGCGTGAAGGAGACCGCGCAGGCGCTGGCCCAGCTCTCCAGGT
GGGATCGAGGTACCAATCACCTCCTGTTCAACATGTTGCCTGGAGGTCCCCCAGATTATA
ACACGGCTCTGGATGTCCCGAGAGATAGGGCTCTGTTGGCTGGTGGTGGCTTTTCTACAT
GGACCTACCGGCAAGGCTACGACGTCAGCATTCCTGTCTATAGTCCTTTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAGTGAGCAGCACCATCTCGCGGGAGTACAACGAGCTGCTCACGGCCATCTCGGACA
GCGACTACTACACGGACGACATCACCCGGGCCTGCCTCTTCGTCCCGTCCATCGACGTGC
TCAACCAGCACACGCTCCGCGTGAAGGAGACCGCGCAGGCGCTGGCCCAGCTCTCCAGGT
GGGATCGAGGTACCAATCACCTCCTGTTCAACATGTTGCCTGGAGGTCCCCCAGATTATA
ACACGGCTCTGGATGTCCCGAGAGATAGGGCTCTGTTGGCTGGTGGTGGCTTTTCTACAT
GGACCTACCGGCAAGGCTACGACGTCAGCATTCCTGTCTATAGTCCTTTGTCA

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-180, gnl|bosTau2|chr15 (47297622-47297443)
               

               
               1-180, gnl|canFam2|chr18 (48161894-48161669)
               

               
               1-180, gnl|danRer3|chr7 (12674901-12675128)
               

               
               1-180, gnl|dasNov1|scaffold_12229 (73696-73465)
               

               
               1-180, gnl|fr1|chrUn (105967653-105967880)
               

               
               1-180, gnl|galGal2|chr5 (18969819-18970059)
               

               
               1-180, gnl|hg17|chr11 (44086154-44086383)
               

               
               1-180, gnl|Hg17|chr11 (44086197-44086376)
               

               
               1-180, gnl|loxAfr1|scaffold_257 (73455-73684)
               

               
               1-180, gnl|mm7|chr2 (93664337-93664108)
               

               
               1-180, gnl|Mm7|chr2 (93664292-93664113)
               

               
               1-180, gnl|monDom2|scaffold_33 (9487603-9487832)
               

               
               1-180, gnl|oryCun1|scaffold_203318 (35334-35563)
               

               
               1-180, gnl|panTro1|chr9 (44583174-44583403)
               

               
               1-180, gnl|rheMac2|chr14 (28002817-28002588)
               

               
               1-180, gnl|rn3|chr3 (78131480-78131251)
               

               
               1-180, gnl|tetNig1|chr5 (7020298-7020071)
               

               
               1-180, gnl|xenTro1|scaffold_266 (901707-901478)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-180, gnl|bosTau2|chr15 (47297622-47297443)
               

               
               1-180, gnl|canFam2|chr18 (48161894-48161669)
               

               
               1-180, gnl|danRer3|chr7 (12674901-12675128)
               

               
               1-180, gnl|dasNov1|scaffold_12229 (73696-73465)
               

               
               1-180, gnl|fr1|chrUn (105967653-105967880)
               

               
               1-180, gnl|galGal2|chr5 (18969819-18970059)
               

               
               1-180, gnl|hg17|chr11 (44086154-44086383)
               

               
               1-180, gnl|Hg17|chr11 (44086197-44086376)
               

               
               1-180, gnl|loxAfr1|scaffold_257 (73455-73684)
               

               
               1-180, gnl|mm7|chr2 (93664337-93664108)
               

               
               1-180, gnl|Mm7|chr2 (93664292-93664113)
               

               
               1-180, gnl|monDom2|scaffold_33 (9487603-9487832)
               

               
               1-180, gnl|oryCun1|scaffold_203318 (35334-35563)
               

               
               1-180, gnl|panTro1|chr9 (44583174-44583403)
               

               
               1-180, gnl|rheMac2|chr14 (28002817-28002588)
               

               
               1-180, gnl|rn3|chr3 (78131480-78131251)
               

               
               1-180, gnl|tetNig1|chr5 (7020298-7020071)
               

               
               1-180, gnl|xenTro1|scaffold_266 (901707-901478)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-180, gnl\|bosTau2\|chr15 (47297622-47297443)
	1-180, gnl\|canFam2\|chr18 (48161894-48161669)
	1-180, gnl\|danRer3\|chr7 (12674901-12675128)
	1-180, gnl\|dasNov1\|scaffold_12229 (73696-73465)
	1-180, gnl\|fr1\|chrUn (105967653-105967880)
	1-180, gnl\|galGal2\|chr5 (18969819-18970059)
	1-180, gnl\|hg17\|chr11 (44086154-44086383)
	1-180, gnl\|Hg17\|chr11 (44086197-44086376)
	1-180, gnl\|loxAfr1\|scaffold_257 (73455-73684)
	1-180, gnl\|mm7\|chr2 (93664337-93664108)
	1-180, gnl\|Mm7\|chr2 (93664292-93664113)
	1-180, gnl\|monDom2\|scaffold_33 (9487603-9487832)
	1-180, gnl\|oryCun1\|scaffold_203318 (35334-35563)
	1-180, gnl\|panTro1\|chr9 (44583174-44583403)
	1-180, gnl\|rheMac2\|chr14 (28002817-28002588)
	1-180, gnl\|rn3\|chr3 (78131480-78131251)
	1-180, gnl\|tetNig1\|chr5 (7020298-7020071)
	1-180, gnl\|xenTro1\|scaffold_266 (901707-901478)