Non-Coding RNA Search

rnlu1831b_f1.y1

Sequence:


               
               GCCGCCCTTCAGCTTTCGCCACGTGCTGTCCCTCACGGGGGATGCTAAGGCCTTCGAGCA
GGAAGTGGGGCGCCAGAGTGTGTCTGGCAACCTGGACTCCCCCGAAGGTGGCTTCGATGC
CATTCTGCAGGCTGCCCTCTGCCAGGAGCAGATTGGCTGGAGAAATGTGTCCCGGCTACT
GGTGTTCACTTCTGATGACACATTCCACACCGCTGGGGATGGGAAGTTGGGTGGCATTTT
CATGCCCAGCGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCCTTCAGCTTTCGCCACGTGCTGTCCCTCACGGGGGATGCTAAGGCCTTCGAGCA
GGAAGTGGGGCGCCAGAGTGTGTCTGGCAACCTGGACTCCCCCGAAGGTGGCTTCGATGC
CATTCTGCAGGCTGCCCTCTGCCAGGAGCAGATTGGCTGGAGAAATGTGTCCCGGCTACT
GGTGTTCACTTCTGATGACACATTCCACACCGCTGGGGATGGGAAGTTGGGTGGCATTTT
CATGCCCAGCGATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-146, + strand, RNAz p=0.808265

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-146, + strand, RNAz p=0.808265

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-146, gnl|bosTau2|chr5 (19217829-19217974)
               

               
               1-146, gnl|canFam2|chr27 (4993556-4993409)
               

               
               1-146, gnl|danRer3|chr6 (20975000-20974858)
               

               
               1-146, gnl|dasNov1|scaffold_71479 (8234-8381)
               

               
               1-146, gnl|echTel1|scaffold_298436 (11184-11041)
               

               
               1-146, gnl|fr1|chrUn (195072781-195072923)
               

               
               1-146, gnl|galGal2|chr7 (7038994-7039144)
               

               
               1-146, gnl|hg17|chr12 (51876618-51876768)
               

               
               1-146, gnl|Hg17|chr12 (51876774-51876629)
               

               
               1-146, gnl|loxAfr1|scaffold_490 (37397-37532)
               

               
               1-146, gnl|mm7|chr15 (102209485-102209626)
               

               
               1-146, gnl|Mm7|chr15 (102209632-102209487)
               

               
               1-146, gnl|monDom2|scaffold_189 (1254565-1254715)
               

               
               1-146, gnl|oryCun1|scaffold_192238 (74610-74751)
               

               
               1-146, gnl|panTro1|chr10 (53113591-53113738)
               

               
               1-146, gnl|rheMac2|chr16 (71038302-71038152)
               

               
               1-146, gnl|rn3|chr7 (141055352-141055493)
               

               
               1-146, gnl|tetNig1|chr15 (1276646-1276506)
               

               
               1-146, gnl|xenTro1|scaffold_280 (1417655-1417513)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-146, gnl|bosTau2|chr5 (19217829-19217974)
               

               
               1-146, gnl|canFam2|chr27 (4993556-4993409)
               

               
               1-146, gnl|danRer3|chr6 (20975000-20974858)
               

               
               1-146, gnl|dasNov1|scaffold_71479 (8234-8381)
               

               
               1-146, gnl|echTel1|scaffold_298436 (11184-11041)
               

               
               1-146, gnl|fr1|chrUn (195072781-195072923)
               

               
               1-146, gnl|galGal2|chr7 (7038994-7039144)
               

               
               1-146, gnl|hg17|chr12 (51876618-51876768)
               

               
               1-146, gnl|Hg17|chr12 (51876774-51876629)
               

               
               1-146, gnl|loxAfr1|scaffold_490 (37397-37532)
               

               
               1-146, gnl|mm7|chr15 (102209485-102209626)
               

               
               1-146, gnl|Mm7|chr15 (102209632-102209487)
               

               
               1-146, gnl|monDom2|scaffold_189 (1254565-1254715)
               

               
               1-146, gnl|oryCun1|scaffold_192238 (74610-74751)
               

               
               1-146, gnl|panTro1|chr10 (53113591-53113738)
               

               
               1-146, gnl|rheMac2|chr16 (71038302-71038152)
               

               
               1-146, gnl|rn3|chr7 (141055352-141055493)
               

               
               1-146, gnl|tetNig1|chr15 (1276646-1276506)
               

               
               1-146, gnl|xenTro1|scaffold_280 (1417655-1417513)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-146, gnl\|bosTau2\|chr5 (19217829-19217974)
	1-146, gnl\|canFam2\|chr27 (4993556-4993409)
	1-146, gnl\|danRer3\|chr6 (20975000-20974858)
	1-146, gnl\|dasNov1\|scaffold_71479 (8234-8381)
	1-146, gnl\|echTel1\|scaffold_298436 (11184-11041)
	1-146, gnl\|fr1\|chrUn (195072781-195072923)
	1-146, gnl\|galGal2\|chr7 (7038994-7039144)
	1-146, gnl\|hg17\|chr12 (51876618-51876768)
	1-146, gnl\|Hg17\|chr12 (51876774-51876629)
	1-146, gnl\|loxAfr1\|scaffold_490 (37397-37532)
	1-146, gnl\|mm7\|chr15 (102209485-102209626)
	1-146, gnl\|Mm7\|chr15 (102209632-102209487)
	1-146, gnl\|monDom2\|scaffold_189 (1254565-1254715)
	1-146, gnl\|oryCun1\|scaffold_192238 (74610-74751)
	1-146, gnl\|panTro1\|chr10 (53113591-53113738)
	1-146, gnl\|rheMac2\|chr16 (71038302-71038152)
	1-146, gnl\|rn3\|chr7 (141055352-141055493)
	1-146, gnl\|tetNig1\|chr15 (1276646-1276506)
	1-146, gnl\|xenTro1\|scaffold_280 (1417655-1417513)