Non-Coding RNA Search

rnlu1835b_d24.y1

Sequence:


               
               AAATCCAAGAAATTTACTCTGAAGCGGCTCATGGCAGATGAGCTGGAGAGGTTTACCAGC
ATGAGAATTAAGAAGGAGAAAGAAAAGCCTAATTCTGCAAATAGAAATTCTTCTGCATCA
TATGGGGACGATCCCACAGCACAGTCATTGCAGGATGTTTCCGATGAGCAAGTCCTAGTC
CTCTTTGAACAGATGCTGCTGGACATGAACCTGAACGAGGAGAAGCAGCAGCCTCTGAGG
GAGAAGGATATCATCATCAAGAGAGAGATGGTGTCCCAGTACCTGCACACCTCCAAGGCC
GGCATGAGCCAGAAGGAGAGCTCCAGGTCGGCTATGATGTACATTCAGGAGCTGAGGTCA
GGCCTGCGGGATATGCCTCTGCTCAGCTGCCTGGAGTCCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATCCAAGAAATTTACTCTGAAGCGGCTCATGGCAGATGAGCTGGAGAGGTTTACCAGC
ATGAGAATTAAGAAGGAGAAAGAAAAGCCTAATTCTGCAAATAGAAATTCTTCTGCATCA
TATGGGGACGATCCCACAGCACAGTCATTGCAGGATGTTTCCGATGAGCAAGTCCTAGTC
CTCTTTGAACAGATGCTGCTGGACATGAACCTGAACGAGGAGAAGCAGCAGCCTCTGAGG
GAGAAGGATATCATCATCAAGAGAGAGATGGTGTCCCAGTACCTGCACACCTCCAAGGCC
GGCATGAGCCAGAAGGAGAGCTCCAGGTCGGCTATGATGTACATTCAGGAGCTGAGGTCA
GGCCTGCGGGATATGCCTCTGCTCAGCTGCCTGGAGTCCCTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|12849636|dbj|BAB28425.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|12849636|dbj|BAB28425.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               301-403, + strand, RNAz p=0.742346

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               301-403, + strand, RNAz p=0.742346

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AF051782, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF051782, +

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

Help | Less info


               
               41-198, gnl|bosTau2|chr7 (35421236-35421079)
               

               
               41-198, gnl|Hg17|chr5 (140946950-140946793)
               

               
               41-198, gnl|Mm7|chr18 (38281363-38281206)
               


               
               301-403, gnl|bosTau2|chr7 (35417999-35417897)
               

               
               301-403, gnl|canFam2|chr2 (39393173-39393340)
               

               
               301-403, gnl|danRer3|chrNA (71623142-71623282)
               

               
               301-403, gnl|dasNov1|scaffold_71109 (7519-7351)
               

               
               301-403, gnl|echTel1|scaffold_278297 (31142-30974)
               

               
               301-403, gnl|fr1|chrUn (131326280-131326114)
               

               
               301-403, gnl|hg17|chr5 (140943233-140943400)
               

               
               301-403, gnl|Hg17|chr5 (140943366-140943264)
               

               
               301-403, gnl|loxAfr1|scaffold_71756 (7776-7944)
               

               
               301-403, gnl|mm7|chr18 (38279526-38279690)
               

               
               301-403, gnl|Mm7|chr18 (38279659-38279557)
               

               
               301-403, gnl|monDom2|scaffold_6 (67010141-67009978)
               

               
               301-403, gnl|oryCun1|scaffold_184620 (7420-7588)
               

               
               301-403, gnl|panTro1|chr4 (147579257-147579424)
               

               
               301-403, gnl|rheMac2|chr6 (137979618-137979785)
               

               
               301-403, gnl|rn3|chr18 (30850571-30850738)
               

               
               301-403, gnl|tetNig1|chr1 (6660371-6660511)
               

               
               301-403, gnl|xenTro1|scaffold_15 (3644782-3644608)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-198, gnl|bosTau2|chr7 (35421236-35421079)
               

               
               41-198, gnl|Hg17|chr5 (140946950-140946793)
               

               
               41-198, gnl|Mm7|chr18 (38281363-38281206)
               


               
               301-403, gnl|bosTau2|chr7 (35417999-35417897)
               

               
               301-403, gnl|canFam2|chr2 (39393173-39393340)
               

               
               301-403, gnl|danRer3|chrNA (71623142-71623282)
               

               
               301-403, gnl|dasNov1|scaffold_71109 (7519-7351)
               

               
               301-403, gnl|echTel1|scaffold_278297 (31142-30974)
               

               
               301-403, gnl|fr1|chrUn (131326280-131326114)
               

               
               301-403, gnl|hg17|chr5 (140943233-140943400)
               

               
               301-403, gnl|Hg17|chr5 (140943366-140943264)
               

               
               301-403, gnl|loxAfr1|scaffold_71756 (7776-7944)
               

               
               301-403, gnl|mm7|chr18 (38279526-38279690)
               

               
               301-403, gnl|Mm7|chr18 (38279659-38279557)
               

               
               301-403, gnl|monDom2|scaffold_6 (67010141-67009978)
               

               
               301-403, gnl|oryCun1|scaffold_184620 (7420-7588)
               

               
               301-403, gnl|panTro1|chr4 (147579257-147579424)
               

               
               301-403, gnl|rheMac2|chr6 (137979618-137979785)
               

               
               301-403, gnl|rn3|chr18 (30850571-30850738)
               

               
               301-403, gnl|tetNig1|chr1 (6660371-6660511)
               

               
               301-403, gnl|xenTro1|scaffold_15 (3644782-3644608)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	41-198, gnl\|bosTau2\|chr7 (35421236-35421079)
	41-198, gnl\|Hg17\|chr5 (140946950-140946793)
	41-198, gnl\|Mm7\|chr18 (38281363-38281206)

	301-403, gnl\|bosTau2\|chr7 (35417999-35417897)
	301-403, gnl\|canFam2\|chr2 (39393173-39393340)
	301-403, gnl\|danRer3\|chrNA (71623142-71623282)
	301-403, gnl\|dasNov1\|scaffold_71109 (7519-7351)
	301-403, gnl\|echTel1\|scaffold_278297 (31142-30974)
	301-403, gnl\|fr1\|chrUn (131326280-131326114)
	301-403, gnl\|hg17\|chr5 (140943233-140943400)
	301-403, gnl\|Hg17\|chr5 (140943366-140943264)
	301-403, gnl\|loxAfr1\|scaffold_71756 (7776-7944)
	301-403, gnl\|mm7\|chr18 (38279526-38279690)
	301-403, gnl\|Mm7\|chr18 (38279659-38279557)
	301-403, gnl\|monDom2\|scaffold_6 (67010141-67009978)
	301-403, gnl\|oryCun1\|scaffold_184620 (7420-7588)
	301-403, gnl\|panTro1\|chr4 (147579257-147579424)
	301-403, gnl\|rheMac2\|chr6 (137979618-137979785)
	301-403, gnl\|rn3\|chr18 (30850571-30850738)
	301-403, gnl\|tetNig1\|chr1 (6660371-6660511)
	301-403, gnl\|xenTro1\|scaffold_15 (3644782-3644608)