Non-Coding RNA Search

rnmm07c_a10.y1

Sequence:


               
               CTTGAATTTATTGTGTGGATTGTTAGTTTTTTCTAATTAAAGATTATCTTACTTCCATTG
AAAATGGGAGCTAGAAGATAAACAGGGGCAACCACAAGACATTCAAACTGTCAGGAATAG
AGCACAATAGTGCTCACCCTCTAACCTCTTTCCTAGTTCCATTAGTCCCCAAGCATGTTT
AAAAACAAAAGGCACAAACTAAGCATGTTGAATAAATAAGCTGCTACGACTATACTAGAA
AGGTGCAGAGTTTCAGAAAGGGTATGGAAATTACCAGTATCTTGGGATGGGGTTTGTCTG
ATAAAGTTTATATGGCTTAAGGTTGGTCTCTTAAAACTAGAATCCTGCAGGTGAACAGAG
TGATATGTACATATTTCAGATGTTCCAGGATTTTCAGATAACTAGGCAACTTTGGATGGT
ATTGGTATTAACCATCCATAAAGGATCTTTTCCACAAAGGAGCCCATTCCATTTTGTGGA
AATAGTCCTGAAAATATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAATTTATTGTGTGGATTGTTAGTTTTTTCTAATTAAAGATTATCTTACTTCCATTG
AAAATGGGAGCTAGAAGATAAACAGGGGCAACCACAAGACATTCAAACTGTCAGGAATAG
AGCACAATAGTGCTCACCCTCTAACCTCTTTCCTAGTTCCATTAGTCCCCAAGCATGTTT
AAAAACAAAAGGCACAAACTAAGCATGTTGAATAAATAAGCTGCTACGACTATACTAGAA
AGGTGCAGAGTTTCAGAAAGGGTATGGAAATTACCAGTATCTTGGGATGGGGTTTGTCTG
ATAAAGTTTATATGGCTTAAGGTTGGTCTCTTAAAACTAGAATCCTGCAGGTGAACAGAG
TGATATGTACATATTTCAGATGTTCCAGGATTTTCAGATAACTAGGCAACTTTGGATGGT
ATTGGTATTAACCATCCATAAAGGATCTTTTCCACAAAGGAGCCCATTCCATTTTGTGGA
AATAGTCCTGAAAATATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-233, - strand, RNAz p=0.975672
               

               
               390-496, + strand, RNAz p=0.995799

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-233, - strand, RNAz p=0.975672
               

               
               390-496, + strand, RNAz p=0.995799

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-496, gnl|bosTau2|chr10 (26087477-26087985)
               

               
               1-496, gnl|Hg17|chr15 (39383934-39384473)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-496, gnl|bosTau2|chr10 (26087477-26087985)
               

               
               1-496, gnl|Hg17|chr15 (39383934-39384473)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-233, - strand, RNAz p=0.975672
	390-496, + strand, RNAz p=0.995799

	1-496, gnl\|bosTau2\|chr10 (26087477-26087985)
	1-496, gnl\|Hg17\|chr15 (39383934-39384473)