Non-Coding RNA Search

rnmm09c_g23.y1

Sequence:


               
               CCATCTTCACTTGCCGCCCGAACTCACACCCTTTTCAAGAGCGTCATGTCTACCTGGACG
AGCCTATTAAAATCGGCCGCTCGGTGGCCCGTTGTCGACCAGCACAGAATAATGCTACCT
TTGATTGCAAAGTGCTGTCAAGGAACCATGCTCTCGTCTGGTTGGATCACAAGACGGGCA
AGTTTTATCTCCAAGACACTAAAAGTAGTAATGGTACCTTTATAAATAGCCAGAGATTGA
GTCGAGGCTCTGAAGAAAGTCCACCATGTGAAATTCTTTCCGGTGACATTATCCAGTTGG
GGGTAGATGTGACGGAGAACACACGGAAAGTTACCCATGGGTGTATGGTTTCCACAATAA
AACTTTTTCTACCAGATGGTATGGAAGCCCGGCTCCGCTCAGATGTCATCCATGCTCCAT
TACCAAGTCCTGTTGACAAAGTTGCTGCTAACACTCCAAGTATGTACTCTCAGGAACTAT
TCCAGCTTTCTCAGTATCTTCAGGAGGCCTTACATCGGGAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATCTTCACTTGCCGCCCGAACTCACACCCTTTTCAAGAGCGTCATGTCTACCTGGACG
AGCCTATTAAAATCGGCCGCTCGGTGGCCCGTTGTCGACCAGCACAGAATAATGCTACCT
TTGATTGCAAAGTGCTGTCAAGGAACCATGCTCTCGTCTGGTTGGATCACAAGACGGGCA
AGTTTTATCTCCAAGACACTAAAAGTAGTAATGGTACCTTTATAAATAGCCAGAGATTGA
GTCGAGGCTCTGAAGAAAGTCCACCATGTGAAATTCTTTCCGGTGACATTATCCAGTTGG
GGGTAGATGTGACGGAGAACACACGGAAAGTTACCCATGGGTGTATGGTTTCCACAATAA
AACTTTTTCTACCAGATGGTATGGAAGCCCGGCTCCGCTCAGATGTCATCCATGCTCCAT
TACCAAGTCCTGTTGACAAAGTTGCTGCTAACACTCCAAGTATGTACTCTCAGGAACTAT
TCCAGCTTTCTCAGTATCTTCAGGAGGCCTTACATCGGGAACAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61882309|ref|XP_615670.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882309|ref|XP_615670.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-182, gnl|bosTau2|chr22 (31488511-31488692)
               

               
               1-182, gnl|canFam2|chr20 (35736473-35736189)
               

               
               1-182, gnl|danRer3|chrNA (103292643-103292910)
               

               
               1-182, gnl|dasNov1|scaffold_6434 (16471-16753)
               

               
               1-182, gnl|echTel1|scaffold_311836 (11736-11455)
               

               
               1-182, gnl|galGal2|chr12 (8820439-8820719)
               

               
               1-182, gnl|hg17|chr3 (57718348-57718630)
               

               
               1-182, gnl|Hg17|chr3 (57718435-57718616)
               

               
               1-182, gnl|loxAfr1|scaffold_36588 (33398-33678)
               

               
               1-182, gnl|mm7|chr14 (23924363-23924083)
               

               
               1-182, gnl|Mm7|chr14 (23924276-23924095)
               

               
               1-182, gnl|monDom2|scaffold_5 (2640727-2641007)
               

               
               1-182, gnl|oryCun1|scaffold_196955 (105253-105530)
               

               
               1-182, gnl|panTro1|chr2 (59468021-59468303)
               

               
               1-182, gnl|rheMac2|chr2 (78635881-78635599)
               

               
               1-182, gnl|rn3|chr16 (1820967-1820686)
               

               
               1-182, gnl|tetNig1|chrUn_random (11614123-11614392)
               

               
               1-182, gnl|xenTro1|scaffold_80 (1975871-1976134)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr22 (31488511-31488692)
               

               
               1-182, gnl|canFam2|chr20 (35736473-35736189)
               

               
               1-182, gnl|danRer3|chrNA (103292643-103292910)
               

               
               1-182, gnl|dasNov1|scaffold_6434 (16471-16753)
               

               
               1-182, gnl|echTel1|scaffold_311836 (11736-11455)
               

               
               1-182, gnl|galGal2|chr12 (8820439-8820719)
               

               
               1-182, gnl|hg17|chr3 (57718348-57718630)
               

               
               1-182, gnl|Hg17|chr3 (57718435-57718616)
               

               
               1-182, gnl|loxAfr1|scaffold_36588 (33398-33678)
               

               
               1-182, gnl|mm7|chr14 (23924363-23924083)
               

               
               1-182, gnl|Mm7|chr14 (23924276-23924095)
               

               
               1-182, gnl|monDom2|scaffold_5 (2640727-2641007)
               

               
               1-182, gnl|oryCun1|scaffold_196955 (105253-105530)
               

               
               1-182, gnl|panTro1|chr2 (59468021-59468303)
               

               
               1-182, gnl|rheMac2|chr2 (78635881-78635599)
               

               
               1-182, gnl|rn3|chr16 (1820967-1820686)
               

               
               1-182, gnl|tetNig1|chrUn_random (11614123-11614392)
               

               
               1-182, gnl|xenTro1|scaffold_80 (1975871-1976134)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-182, gnl\|bosTau2\|chr22 (31488511-31488692)
	1-182, gnl\|canFam2\|chr20 (35736473-35736189)
	1-182, gnl\|danRer3\|chrNA (103292643-103292910)
	1-182, gnl\|dasNov1\|scaffold_6434 (16471-16753)
	1-182, gnl\|echTel1\|scaffold_311836 (11736-11455)
	1-182, gnl\|galGal2\|chr12 (8820439-8820719)
	1-182, gnl\|hg17\|chr3 (57718348-57718630)
	1-182, gnl\|Hg17\|chr3 (57718435-57718616)
	1-182, gnl\|loxAfr1\|scaffold_36588 (33398-33678)
	1-182, gnl\|mm7\|chr14 (23924363-23924083)
	1-182, gnl\|Mm7\|chr14 (23924276-23924095)
	1-182, gnl\|monDom2\|scaffold_5 (2640727-2641007)
	1-182, gnl\|oryCun1\|scaffold_196955 (105253-105530)
	1-182, gnl\|panTro1\|chr2 (59468021-59468303)
	1-182, gnl\|rheMac2\|chr2 (78635881-78635599)
	1-182, gnl\|rn3\|chr16 (1820967-1820686)
	1-182, gnl\|tetNig1\|chrUn_random (11614123-11614392)
	1-182, gnl\|xenTro1\|scaffold_80 (1975871-1976134)