Non-Coding RNA Search

rnmm09c_p5.y1

Sequence:


               
               CAGGCACCAGCCTAGCGCTCTATTCTGCTCTGGGAACTGCTATGGCCCGGGAAGAAACCA
GTACCTGGAAAAGGAGCAGCGGCGGCAGTACCTCTTACGTCTGAAGAACAGCCAGCTGGA
GAAGACCTACGGGGAGATGGCCAGGATCGTGGACATCCCCACCAAGCAGCTCCGCGCTGC
CAACCCCATAGATTCCATGCTCTGCCACTTCTGCCACAACGTCAGCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCACCAGCCTAGCGCTCTATTCTGCTCTGGGAACTGCTATGGCCCGGGAAGAAACCA
GTACCTGGAAAAGGAGCAGCGGCGGCAGTACCTCTTACGTCTGAAGAACAGCCAGCTGGA
GAAGACCTACGGGGAGATGGCCAGGATCGTGGACATCCCCACCAAGCAGCTCCGCGCTGC
CAACCCCATAGATTCCATGCTCTGCCACTTCTGCCACAACGTCAGCTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-230, - strand, RNAz p=0.883392

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-230, - strand, RNAz p=0.883392

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-230, gnl|bosTau2|chr1 (79862063-79861834)
               

               
               1-230, gnl|canFam2|chr23 (40250354-40250854)
               

               
               1-230, gnl|danRer3|chrNA (75917957-75918487)
               

               
               1-230, gnl|dasNov1|scaffold_14648 (41788-41288)
               

               
               1-230, gnl|echTel1|scaffold_286365 (49308-49808)
               

               
               1-230, gnl|fr1|chrUn (322258992-322258482)
               

               
               1-230, gnl|galGal2|chr9 (6761011-6760513)
               

               
               1-230, gnl|hg17|chr3 (142493801-142494301)
               

               
               1-230, gnl|Hg17|chr3 (142493998-142494227)
               

               
               1-230, gnl|loxAfr1|scaffold_9689 (26881-26381)
               

               
               1-230, gnl|mm7|chr9 (96467274-96466774)
               

               
               1-230, gnl|Mm7|chr9 (96467075-96466846)
               

               
               1-230, gnl|monDom2|scaffold_24 (38119476-38119976)
               

               
               1-230, gnl|oryCun1|scaffold_208690 (22620-22119)
               

               
               1-230, gnl|panTro1|chr2 (145030010-145030510)
               

               
               1-230, gnl|rheMac2|chr2 (146548963-146548463)
               

               
               1-230, gnl|rn3|chr8 (101939533-101939033)
               

               
               1-230, gnl|tetNig1|chr16 (7407334-7406823)
               

               
               1-230, gnl|xenTro1|scaffold_907 (262209-261711)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-230, gnl|bosTau2|chr1 (79862063-79861834)
               

               
               1-230, gnl|canFam2|chr23 (40250354-40250854)
               

               
               1-230, gnl|danRer3|chrNA (75917957-75918487)
               

               
               1-230, gnl|dasNov1|scaffold_14648 (41788-41288)
               

               
               1-230, gnl|echTel1|scaffold_286365 (49308-49808)
               

               
               1-230, gnl|fr1|chrUn (322258992-322258482)
               

               
               1-230, gnl|galGal2|chr9 (6761011-6760513)
               

               
               1-230, gnl|hg17|chr3 (142493801-142494301)
               

               
               1-230, gnl|Hg17|chr3 (142493998-142494227)
               

               
               1-230, gnl|loxAfr1|scaffold_9689 (26881-26381)
               

               
               1-230, gnl|mm7|chr9 (96467274-96466774)
               

               
               1-230, gnl|Mm7|chr9 (96467075-96466846)
               

               
               1-230, gnl|monDom2|scaffold_24 (38119476-38119976)
               

               
               1-230, gnl|oryCun1|scaffold_208690 (22620-22119)
               

               
               1-230, gnl|panTro1|chr2 (145030010-145030510)
               

               
               1-230, gnl|rheMac2|chr2 (146548963-146548463)
               

               
               1-230, gnl|rn3|chr8 (101939533-101939033)
               

               
               1-230, gnl|tetNig1|chr16 (7407334-7406823)
               

               
               1-230, gnl|xenTro1|scaffold_907 (262209-261711)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-230, gnl\|bosTau2\|chr1 (79862063-79861834)
	1-230, gnl\|canFam2\|chr23 (40250354-40250854)
	1-230, gnl\|danRer3\|chrNA (75917957-75918487)
	1-230, gnl\|dasNov1\|scaffold_14648 (41788-41288)
	1-230, gnl\|echTel1\|scaffold_286365 (49308-49808)
	1-230, gnl\|fr1\|chrUn (322258992-322258482)
	1-230, gnl\|galGal2\|chr9 (6761011-6760513)
	1-230, gnl\|hg17\|chr3 (142493801-142494301)
	1-230, gnl\|Hg17\|chr3 (142493998-142494227)
	1-230, gnl\|loxAfr1\|scaffold_9689 (26881-26381)
	1-230, gnl\|mm7\|chr9 (96467274-96466774)
	1-230, gnl\|Mm7\|chr9 (96467075-96466846)
	1-230, gnl\|monDom2\|scaffold_24 (38119476-38119976)
	1-230, gnl\|oryCun1\|scaffold_208690 (22620-22119)
	1-230, gnl\|panTro1\|chr2 (145030010-145030510)
	1-230, gnl\|rheMac2\|chr2 (146548963-146548463)
	1-230, gnl\|rn3\|chr8 (101939533-101939033)
	1-230, gnl\|tetNig1\|chr16 (7407334-7406823)
	1-230, gnl\|xenTro1\|scaffold_907 (262209-261711)