Non-Coding RNA Search

rnmm10c_a20.y1

Sequence:


               
               CAGGCTCGCTCGTCCACCACTTCGCCCTCGCCATCACTGTACCCTCGCAGTCACCATCCA
AGCGCCCTGGCTCTGCTGCTCCCTCCTACCCTCTAGCCCCAAGCTGGCCGCCTCCGAAGC
CCCTGACGCCATGGAGGAGTGGGACGTGCCCCAGATGAAGAAGGAGGTGGAGAGTCTCAA
GTACCAGCTGGCCTTCCAGAGGGAGACGTCATCCAAGACCATCCCCGAGCTCCTCAAGTG
GATCGAGGAGGGGATCCCCAAGGACCCCTTCCTGAACCCGGACCTGATGAAGAGCAACCC
GTGGGTGGAGAAGGGCAAGTGCGCCATCCTGTGAGGCCCCCCCGGACTCCGCCTCCCGGG
AACCAGGACGACTCTGCAAGGGTCGGACTTTTATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTCGCTCGTCCACCACTTCGCCCTCGCCATCACTGTACCCTCGCAGTCACCATCCA
AGCGCCCTGGCTCTGCTGCTCCCTCCTACCCTCTAGCCCCAAGCTGGCCGCCTCCGAAGC
CCCTGACGCCATGGAGGAGTGGGACGTGCCCCAGATGAAGAAGGAGGTGGAGAGTCTCAA
GTACCAGCTGGCCTTCCAGAGGGAGACGTCATCCAAGACCATCCCCGAGCTCCTCAAGTG
GATCGAGGAGGGGATCCCCAAGGACCCCTTCCTGAACCCGGACCTGATGAAGAGCAACCC
GTGGGTGGAGAAGGGCAAGTGCGCCATCCTGTGAGGCCCCCCCGGACTCCGCCTCCCGGG
AACCAGGACGACTCTGCAAGGGTCGGACTTTTATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62739497|gb|AAH93760.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62739497|gb|AAH93760.1|

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               65-229, gnl|bosTau2|chr25 (1124391-1124556)
               

               
               65-229, gnl|canFam2|chr6 (42847715-42847578)
               

               
               65-229, gnl|danRer3|chr1 (2586467-2586575)
               

               
               65-229, gnl|dasNov1|scaffold_105614 (8883-8765)
               

               
               65-229, gnl|echTel1|scaffold_62661 (856-737)
               

               
               65-229, gnl|fr1|chrUn (13709356-13709251)
               

               
               65-229, gnl|galGal2|chr14 (8018741-8018624)
               

               
               65-229, gnl|hg17|chr16 (788971-789089)
               

               
               65-229, gnl|Hg17|chr16 (789145-788980)
               

               
               65-229, gnl|loxAfr1|scaffold_125016 (8169-8287)
               

               
               65-229, gnl|mm7|chr17 (23902050-23901932)
               

               
               65-229, gnl|Mm7|chr17 (23901882-23902039)
               

               
               65-229, gnl|monDom2|scaffold_119 (3457387-3457277)
               

               
               65-229, gnl|panTro1|chr18 (833887-834005)
               

               
               65-229, gnl|rheMac2|chr20 (794535-794653)
               

               
               65-229, gnl|rn3|chr10 (14987930-14987812)
               

               
               65-229, gnl|tetNig1|chr18 (8263315-8263205)
               

               
               65-229, gnl|xenTro1|scaffold_142 (1391358-1391242)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-229, gnl|bosTau2|chr25 (1124391-1124556)
               

               
               65-229, gnl|canFam2|chr6 (42847715-42847578)
               

               
               65-229, gnl|danRer3|chr1 (2586467-2586575)
               

               
               65-229, gnl|dasNov1|scaffold_105614 (8883-8765)
               

               
               65-229, gnl|echTel1|scaffold_62661 (856-737)
               

               
               65-229, gnl|fr1|chrUn (13709356-13709251)
               

               
               65-229, gnl|galGal2|chr14 (8018741-8018624)
               

               
               65-229, gnl|hg17|chr16 (788971-789089)
               

               
               65-229, gnl|Hg17|chr16 (789145-788980)
               

               
               65-229, gnl|loxAfr1|scaffold_125016 (8169-8287)
               

               
               65-229, gnl|mm7|chr17 (23902050-23901932)
               

               
               65-229, gnl|Mm7|chr17 (23901882-23902039)
               

               
               65-229, gnl|monDom2|scaffold_119 (3457387-3457277)
               

               
               65-229, gnl|panTro1|chr18 (833887-834005)
               

               
               65-229, gnl|rheMac2|chr20 (794535-794653)
               

               
               65-229, gnl|rn3|chr10 (14987930-14987812)
               

               
               65-229, gnl|tetNig1|chr18 (8263315-8263205)
               

               
               65-229, gnl|xenTro1|scaffold_142 (1391358-1391242)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	65-229, gnl\|bosTau2\|chr25 (1124391-1124556)
	65-229, gnl\|canFam2\|chr6 (42847715-42847578)
	65-229, gnl\|danRer3\|chr1 (2586467-2586575)
	65-229, gnl\|dasNov1\|scaffold_105614 (8883-8765)
	65-229, gnl\|echTel1\|scaffold_62661 (856-737)
	65-229, gnl\|fr1\|chrUn (13709356-13709251)
	65-229, gnl\|galGal2\|chr14 (8018741-8018624)
	65-229, gnl\|hg17\|chr16 (788971-789089)
	65-229, gnl\|Hg17\|chr16 (789145-788980)
	65-229, gnl\|loxAfr1\|scaffold_125016 (8169-8287)
	65-229, gnl\|mm7\|chr17 (23902050-23901932)
	65-229, gnl\|Mm7\|chr17 (23901882-23902039)
	65-229, gnl\|monDom2\|scaffold_119 (3457387-3457277)
	65-229, gnl\|panTro1\|chr18 (833887-834005)
	65-229, gnl\|rheMac2\|chr20 (794535-794653)
	65-229, gnl\|rn3\|chr10 (14987930-14987812)
	65-229, gnl\|tetNig1\|chr18 (8263315-8263205)
	65-229, gnl\|xenTro1\|scaffold_142 (1391358-1391242)