Non-Coding RNA Search

rnmm10c_k21.y1

Sequence:


               
               CGCCCCTCCTCACCCAGTAGCTAAGGGGAAACGAAAACAAAGCCGATTTCTCCTTGGCAA
CAAGAGATACCCCCTCCCGCCGCCCCCCCTTCCTTTTTCCTTCTGGTTCTGAACGTGAAA
CCCTGTTGGAAACAGGTCCCTTGACCCTCGCCCTTGACATTCAAATGGCTGAATGGAGGA
GAGATTGCTACTCGCACGTCTTGGGGGCTGCTTTTCTCTCTCTCTCTCTTTTCCTTTCAA
ATGAGTAATCCCTGAAGATCTTAACCCCCCAATTTCCTCACCCTCACCTCCCCCCTTTAT
TTTTCTCGCGCTCCTCTCCGCTCTCCCGCCTGCTTCCCTCGCCGTGCGCCCCCCTCCTTC
TTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCGGGCA
GCCGTGGAGGCTCCGGCCGGTCCTTGGTCGTCAATTACCTCATTGTGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCCTCCTCACCCAGTAGCTAAGGGGAAACGAAAACAAAGCCGATTTCTCCTTGGCAA
CAAGAGATACCCCCTCCCGCCGCCCCCCCTTCCTTTTTCCTTCTGGTTCTGAACGTGAAA
CCCTGTTGGAAACAGGTCCCTTGACCCTCGCCCTTGACATTCAAATGGCTGAATGGAGGA
GAGATTGCTACTCGCACGTCTTGGGGGCTGCTTTTCTCTCTCTCTCTCTTTTCCTTTCAA
ATGAGTAATCCCTGAAGATCTTAACCCCCCAATTTCCTCACCCTCACCTCCCCCCTTTAT
TTTTCTCGCGCTCCTCTCCGCTCTCCCGCCTGCTTCCCTCGCCGTGCGCCCCCCTCCTTC
TTTTATTTGCATCTCAAGTCCAAAAGGCAGAAAATACACACGCGGCGAAGACACCGGGCA
GCCGTGGAGGCTCCGGCCGGTCCTTGGTCGTCAATTACCTCATTGTGGATC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               8-203, - strand, RNAz p=0.713891
               

               
               40-256, - strand, RNAz p=0.686902

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-203, - strand, RNAz p=0.713891
               

               
               40-256, - strand, RNAz p=0.686902

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-471, gnl|bosTau2|chr18 (7833608-7834079)
               

               
               1-471, gnl|canFam2|chr5 (70107047-70106558)
               

               
               1-471, gnl|hg17|chr16 (84146529-84147009)
               

               
               1-471, gnl|Hg17|chr16 (84146702-84147178)
               

               
               1-471, gnl|loxAfr1|scaffold_190668 (1235-758)
               

               
               1-471, gnl|mm7|chr8 (119123144-119123636)
               

               
               1-471, gnl|Mm7|chr8 (119123319-119123815)
               

               
               1-471, gnl|rheMac2|chr20 (83718171-83718645)
               

               
               1-471, gnl|rn3|chr19 (50830376-50830874)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-471, gnl|bosTau2|chr18 (7833608-7834079)
               

               
               1-471, gnl|canFam2|chr5 (70107047-70106558)
               

               
               1-471, gnl|hg17|chr16 (84146529-84147009)
               

               
               1-471, gnl|Hg17|chr16 (84146702-84147178)
               

               
               1-471, gnl|loxAfr1|scaffold_190668 (1235-758)
               

               
               1-471, gnl|mm7|chr8 (119123144-119123636)
               

               
               1-471, gnl|Mm7|chr8 (119123319-119123815)
               

               
               1-471, gnl|rheMac2|chr20 (83718171-83718645)
               

               
               1-471, gnl|rn3|chr19 (50830376-50830874)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	8-203, - strand, RNAz p=0.713891
	40-256, - strand, RNAz p=0.686902

	1-471, gnl\|bosTau2\|chr18 (7833608-7834079)
	1-471, gnl\|canFam2\|chr5 (70107047-70106558)
	1-471, gnl\|hg17\|chr16 (84146529-84147009)
	1-471, gnl\|Hg17\|chr16 (84146702-84147178)
	1-471, gnl\|loxAfr1\|scaffold_190668 (1235-758)
	1-471, gnl\|mm7\|chr8 (119123144-119123636)
	1-471, gnl\|Mm7\|chr8 (119123319-119123815)
	1-471, gnl\|rheMac2\|chr20 (83718171-83718645)
	1-471, gnl\|rn3\|chr19 (50830376-50830874)