Non-Coding RNA Search

rnmm12c_g14.y1

Sequence:


               
               AGCCTGCCCTGCCTTCATCTCAGTCTGCTCCTACCCTGACAGCCTTCTCCTTCAGCCATG
CCAAAGGTGCTCACCCTTTGCTAAAAGAAGAGGACCAGAAGGAGACTGGCAGCAAGGTCA
CCATCTCCAAGTCTGCCCAGGAGAAGATGCGGCTGAAGCAGATGAAGGAGGTGGAGCTGC
TCTGGAGGGCCAAGGAGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGCCCTGCCTTCATCTCAGTCTGCTCCTACCCTGACAGCCTTCTCCTTCAGCCATG
CCAAAGGTGCTCACCCTTTGCTAAAAGAAGAGGACCAGAAGGAGACTGGCAGCAAGGTCA
CCATCTCCAAGTCTGCCCAGGAGAAGATGCGGCTGAAGCAGATGAAGGAGGTGGAGCTGC
TCTGGAGGGCCAAGGAGCCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               10-110, - strand, RNAz p=0.561336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               10-110, - strand, RNAz p=0.561336

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-118, gnl|bosTau2|chr11 (50400002-50400119)
               

               
               1-118, gnl|canFam2|chr17 (25966226-25966667)
               

               
               1-118, gnl|dasNov1|scaffold_1927 (466-911)
               

               
               1-118, gnl|echTel1|scaffold_125767 (560-110)
               

               
               1-118, gnl|hg17|chr2 (29148933-29149371)
               

               
               1-118, gnl|Hg17|chr2 (29148963-29149080)
               

               
               1-118, gnl|loxAfr1|scaffold_136784 (2003-1554)
               

               
               1-118, gnl|mm7|chr17 (69979228-69979654)
               

               
               1-118, gnl|Mm7|chr17 (69979261-69979372)
               

               
               1-118, gnl|monDom2|scaffold_1 (146593752-146593291)
               

               
               1-118, gnl|panTro1|chr12_random (13340887-13340449)
               

               
               1-118, gnl|rheMac2|chr13 (29009582-29010005)
               

               
               1-118, gnl|rn3|chr6 (23912161-23911778)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-118, gnl|bosTau2|chr11 (50400002-50400119)
               

               
               1-118, gnl|canFam2|chr17 (25966226-25966667)
               

               
               1-118, gnl|dasNov1|scaffold_1927 (466-911)
               

               
               1-118, gnl|echTel1|scaffold_125767 (560-110)
               

               
               1-118, gnl|hg17|chr2 (29148933-29149371)
               

               
               1-118, gnl|Hg17|chr2 (29148963-29149080)
               

               
               1-118, gnl|loxAfr1|scaffold_136784 (2003-1554)
               

               
               1-118, gnl|mm7|chr17 (69979228-69979654)
               

               
               1-118, gnl|Mm7|chr17 (69979261-69979372)
               

               
               1-118, gnl|monDom2|scaffold_1 (146593752-146593291)
               

               
               1-118, gnl|panTro1|chr12_random (13340887-13340449)
               

               
               1-118, gnl|rheMac2|chr13 (29009582-29010005)
               

               
               1-118, gnl|rn3|chr6 (23912161-23911778)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-118, gnl\|bosTau2\|chr11 (50400002-50400119)
	1-118, gnl\|canFam2\|chr17 (25966226-25966667)
	1-118, gnl\|dasNov1\|scaffold_1927 (466-911)
	1-118, gnl\|echTel1\|scaffold_125767 (560-110)
	1-118, gnl\|hg17\|chr2 (29148933-29149371)
	1-118, gnl\|Hg17\|chr2 (29148963-29149080)
	1-118, gnl\|loxAfr1\|scaffold_136784 (2003-1554)
	1-118, gnl\|mm7\|chr17 (69979228-69979654)
	1-118, gnl\|Mm7\|chr17 (69979261-69979372)
	1-118, gnl\|monDom2\|scaffold_1 (146593752-146593291)
	1-118, gnl\|panTro1\|chr12_random (13340887-13340449)
	1-118, gnl\|rheMac2\|chr13 (29009582-29010005)
	1-118, gnl\|rn3\|chr6 (23912161-23911778)