Non-Coding RNA Search

rnmm14c_k17.y1

Sequence:


               
               GGACTGAGCCACAGTCATGTGCCTGTGTGTATGGGGACCGTGCAGGTGGCGACGTGTATG
CATGTGTCTGCCATGTAGGCATGTGCGTCTGGGCCCCGGAGGCGCTTGTTAGATGGATCT
GTGTTCCAGACCCCGTGCACTTGTCTGGGTCTGCGCATGCTGGCACGCCTGTGCAATTTC
CCTTCAGGCTCTGCCCTTGTCTCACCTTAGAAACAATCCTGTTGTTTGTGATTTCCTGAT
GGTGACAGTGTCGCCGCGCCCGCCTGTCACTTGTGCACGTGCATACACGGCATGGCTCCG
GAGTGCTGGCTCTGGGAATTCCTGAGAGACTGCCACGGGCCACTTGAGTGGCTCGCTAAT
GGGCTTGCTTCCTTCCGCGGAGAAGTGGTCTAGGAAACGTTTCTGGAAATTAAGTTTCAG
CATTGGTTGAACTTCGGTAAAATCCAGCAACGATGAAGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACTGAGCCACAGTCATGTGCCTGTGTGTATGGGGACCGTGCAGGTGGCGACGTGTATG
CATGTGTCTGCCATGTAGGCATGTGCGTCTGGGCCCCGGAGGCGCTTGTTAGATGGATCT
GTGTTCCAGACCCCGTGCACTTGTCTGGGTCTGCGCATGCTGGCACGCCTGTGCAATTTC
CCTTCAGGCTCTGCCCTTGTCTCACCTTAGAAACAATCCTGTTGTTTGTGATTTCCTGAT
GGTGACAGTGTCGCCGCGCCCGCCTGTCACTTGTGCACGTGCATACACGGCATGGCTCCG
GAGTGCTGGCTCTGGGAATTCCTGAGAGACTGCCACGGGCCACTTGAGTGGCTCGCTAAT
GGGCTTGCTTCCTTCCGCGGAGAAGTGGTCTAGGAAACGTTTCTGGAAATTAAGTTTCAG
CATTGGTTGAACTTCGGTAAAATCCAGCAACGATGAAGTGGC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-193, gnl|bosTau2|chr29 (12687857-12687663)
               

               
               1-193, gnl|canFam2|chr21 (22669298-22668985)
               

               
               1-193, gnl|dasNov1|scaffold_12959 (46998-46699)
               

               
               1-193, gnl|echTel1|scaffold_168523 (2415-2710)
               

               
               1-193, gnl|hg17|chr11 (78667469-78667787)
               

               
               1-193, gnl|Hg17|chr11 (78667786-78667597)
               

               
               1-193, gnl|loxAfr1|scaffold_3905 (159-482)
               

               
               1-193, gnl|mm7|chr7 (92405434-92405094)
               

               
               1-193, gnl|Mm7|chr7 (92405063-92405305)
               

               
               1-193, gnl|oryCun1|scaffold_178041 (49640-49952)
               

               
               1-193, gnl|panTro1|chr9 (80015732-80016050)
               

               
               1-193, gnl|rheMac2|chr14 (77497910-77498230)
               

               
               1-193, gnl|rn3|chr1 (153678284-153677941)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr29 (12687857-12687663)
               

               
               1-193, gnl|canFam2|chr21 (22669298-22668985)
               

               
               1-193, gnl|dasNov1|scaffold_12959 (46998-46699)
               

               
               1-193, gnl|echTel1|scaffold_168523 (2415-2710)
               

               
               1-193, gnl|hg17|chr11 (78667469-78667787)
               

               
               1-193, gnl|Hg17|chr11 (78667786-78667597)
               

               
               1-193, gnl|loxAfr1|scaffold_3905 (159-482)
               

               
               1-193, gnl|mm7|chr7 (92405434-92405094)
               

               
               1-193, gnl|Mm7|chr7 (92405063-92405305)
               

               
               1-193, gnl|oryCun1|scaffold_178041 (49640-49952)
               

               
               1-193, gnl|panTro1|chr9 (80015732-80016050)
               

               
               1-193, gnl|rheMac2|chr14 (77497910-77498230)
               

               
               1-193, gnl|rn3|chr1 (153678284-153677941)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-193, gnl\|bosTau2\|chr29 (12687857-12687663)
	1-193, gnl\|canFam2\|chr21 (22669298-22668985)
	1-193, gnl\|dasNov1\|scaffold_12959 (46998-46699)
	1-193, gnl\|echTel1\|scaffold_168523 (2415-2710)
	1-193, gnl\|hg17\|chr11 (78667469-78667787)
	1-193, gnl\|Hg17\|chr11 (78667786-78667597)
	1-193, gnl\|loxAfr1\|scaffold_3905 (159-482)
	1-193, gnl\|mm7\|chr7 (92405434-92405094)
	1-193, gnl\|Mm7\|chr7 (92405063-92405305)
	1-193, gnl\|oryCun1\|scaffold_178041 (49640-49952)
	1-193, gnl\|panTro1\|chr9 (80015732-80016050)
	1-193, gnl\|rheMac2\|chr14 (77497910-77498230)
	1-193, gnl\|rn3\|chr1 (153678284-153677941)