Non-Coding RNA Search

rnmm15c_c13.y1

Sequence:


               
               ATTCAGCACGAGGACAGGACACTTTGCTGAGAACTGAACTGGTGACCACCTGGCTTCTAG
TGAGAACGGACAACCATAATGGAACCCAAACCTCAGAAGACTCCAGGCAGACAATTTACA
TTTTATTATGAAAATGAAGTCTACAAACAAGATTACTTTATTAAATCACCACCTCCTCAG
CTTTTCTTCTCTGCAGCCTCTTGGAAAAAACGTTTTTTCATTCTGTCAAAGAGTGGGGAA
AAGGGCTTTCGTCTTTCCTATTACAAGGACCATCATCATCGGGGGTCTATTGAAATCGAT
CGAAATTCCAGTGTAGAAGTTGGCATAAGTAGCCATGAAAAAATGCAGTCTGTACAGAAG
ATGTTCAAATGCCACCCTGATGAAGTGATGTCCATCAAAACCACAAACAGGGAATACTTC
CTCATTGGCTATGACAGGGAGAAGATTAAAGACTGGGTCTCCTTCTTGTCATCACTCTGC
TGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGCACGAGGACAGGACACTTTGCTGAGAACTGAACTGGTGACCACCTGGCTTCTAG
TGAGAACGGACAACCATAATGGAACCCAAACCTCAGAAGACTCCAGGCAGACAATTTACA
TTTTATTATGAAAATGAAGTCTACAAACAAGATTACTTTATTAAATCACCACCTCCTCAG
CTTTTCTTCTCTGCAGCCTCTTGGAAAAAACGTTTTTTCATTCTGTCAAAGAGTGGGGAA
AAGGGCTTTCGTCTTTCCTATTACAAGGACCATCATCATCGGGGGTCTATTGAAATCGAT
CGAAATTCCAGTGTAGAAGTTGGCATAAGTAGCCATGAAAAAATGCAGTCTGTACAGAAG
ATGTTCAAATGCCACCCTGATGAAGTGATGTCCATCAAAACCACAAACAGGGAATACTTC
CTCATTGGCTATGACAGGGAGAAGATTAAAGACTGGGTCTCCTTCTTGTCATCACTCTGC
TGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61854237|ref|XP_607532.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61854237|ref|XP_607532.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               321-438, - strand, RNAz p=0.521946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               321-438, - strand, RNAz p=0.521946

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               299-438, gnl|bosTau2|chr26 (22805957-22805818)
               

               
               299-438, gnl|Hg17|chr10 (115517090-115517229)
               

               
               299-438, gnl|Mm7|chr19 (56387257-56387396)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-438, gnl|bosTau2|chr26 (22805957-22805818)
               

               
               299-438, gnl|Hg17|chr10 (115517090-115517229)
               

               
               299-438, gnl|Mm7|chr19 (56387257-56387396)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	299-438, gnl\|bosTau2\|chr26 (22805957-22805818)
	299-438, gnl\|Hg17\|chr10 (115517090-115517229)
	299-438, gnl\|Mm7\|chr19 (56387257-56387396)