Non-Coding RNA Search

rnmm16c_c18.y1

Sequence:


               
               CTGCTGTTACTGCTGCTGCCGCCGCTGCTGCTGTCGCCACCGCTGGCAACCACCCTGTGC
ACTGGGGCTGTTGCTGCTGCTGCCCCTTGTCCTTGTATGTCCCCTGGCAGCAGCCACAGT
AGGCCCAGGCCGCTGTGACACCATATACCAGGGCTTCGCCAAGTGTCTCATCCGCTTGGG
GGACGGCATGGGCAGCGGAGGCGAGCTGGAGACTGTCTGCAGGTCTTGGAATGACTTTCA
CACCTGTGCCTCACAAGTCCTATTGGGCTGCCCAGAGGAGGCAGCTGCCGTGTGGGAGTC
ACTACAGCAAGAAGCACGCCGGGCCCCACACCCAGACAACTTGCATGCTTTGTGTGGCAC
CCCTGTGCGTGTTCAGGAGCGGGGCGCGGGTCCGGAGACCAACCAGGAGACACTGAGGGC
AACAGCGCCTGCACCACCCACCCCAACGCCCACACCCCCACTGCTGGCAGCTGCTCTGGT
GCTTGCCTGCCTCCTGGGACCTCTGGCCTAGCCAGTCTGGTCAGGTAGTAGCACCCCCTC
CTCCTACCCAGCTCGGGTGGCTGCTGTCGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCTGTTACTGCTGCTGCCGCCGCTGCTGCTGTCGCCACCGCTGGCAACCACCCTGTGC
ACTGGGGCTGTTGCTGCTGCTGCCCCTTGTCCTTGTATGTCCCCTGGCAGCAGCCACAGT
AGGCCCAGGCCGCTGTGACACCATATACCAGGGCTTCGCCAAGTGTCTCATCCGCTTGGG
GGACGGCATGGGCAGCGGAGGCGAGCTGGAGACTGTCTGCAGGTCTTGGAATGACTTTCA
CACCTGTGCCTCACAAGTCCTATTGGGCTGCCCAGAGGAGGCAGCTGCCGTGTGGGAGTC
ACTACAGCAAGAAGCACGCCGGGCCCCACACCCAGACAACTTGCATGCTTTGTGTGGCAC
CCCTGTGCGTGTTCAGGAGCGGGGCGCGGGTCCGGAGACCAACCAGGAGACACTGAGGGC
AACAGCGCCTGCACCACCCACCCCAACGCCCACACCCCCACTGCTGGCAGCTGCTCTGGT
GCTTGCCTGCCTCCTGGGACCTCTGGCCTAGCCAGTCTGGTCAGGTAGTAGCACCCCCTC
CTCCTACCCAGCTCGGGTGGCTGCTGTCGGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61860348|ref|XP_607036.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61860348|ref|XP_607036.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               220-338, - strand, RNAz p=0.619965

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               220-338, - strand, RNAz p=0.619965

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               220-570, gnl|bosTau2|chr18 (14974335-14973988)
               

               
               220-570, gnl|Hg17|chr16 (66477375-66477723)
               

               
               220-570, gnl|Mm7|chr8 (104493475-104493829)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               220-570, gnl|bosTau2|chr18 (14974335-14973988)
               

               
               220-570, gnl|Hg17|chr16 (66477375-66477723)
               

               
               220-570, gnl|Mm7|chr8 (104493475-104493829)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	220-570, gnl\|bosTau2\|chr18 (14974335-14973988)
	220-570, gnl\|Hg17\|chr16 (66477375-66477723)
	220-570, gnl\|Mm7\|chr8 (104493475-104493829)