Non-Coding RNA Search

rnmm16c_k15.y1

Sequence:


               
               CAGAATTCCCTTTCTCACTGTCTCCATCTCTGTGGGTTATGGTAAGGTTTTTCCATCAGC
TACCAGGAAAAAAGAGCAACTGTGTACAACATCTTGGTCACTGATATGTCTGATCCGGTG
TGATTGGCTGTGTCTGGCTAATTCTAAGATCCAAGCTCTAGATCTAAGCTCTAGATTTAA
GCTCTAAGCTATAGAGGATAATATCACCATCACCACCACCCTTCATCCATATCCAAGCAA
TCAGCCTTCTTAAGTTAAAGATATTTGTTGTTTCCTGAATGATTTGCTGTCATAGGTTAT
TTGCTAGAAAAAATATTTTTTCACTTGAGAGAGGGAGAGACAGTTTTCTAGGAAAACAAA
GACTGAGTTGTGAAAGTCATGGCCTACATCTCTTTGATGCCTTAAGGGTAGTCAGATGCA
CACATATATATACTGTATATATTTATATATTTTACATATATATATATAAAATATTCTTGC
AAGCTTGAGTTTGCAGTTTCTCAAACACTACAAAGAACAAATTACACAACATCACCAGTG
ACCTTACTTCTATAGTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATTCCCTTTCTCACTGTCTCCATCTCTGTGGGTTATGGTAAGGTTTTTCCATCAGC
TACCAGGAAAAAAGAGCAACTGTGTACAACATCTTGGTCACTGATATGTCTGATCCGGTG
TGATTGGCTGTGTCTGGCTAATTCTAAGATCCAAGCTCTAGATCTAAGCTCTAGATTTAA
GCTCTAAGCTATAGAGGATAATATCACCATCACCACCACCCTTCATCCATATCCAAGCAA
TCAGCCTTCTTAAGTTAAAGATATTTGTTGTTTCCTGAATGATTTGCTGTCATAGGTTAT
TTGCTAGAAAAAATATTTTTTCACTTGAGAGAGGGAGAGACAGTTTTCTAGGAAAACAAA
GACTGAGTTGTGAAAGTCATGGCCTACATCTCTTTGATGCCTTAAGGGTAGTCAGATGCA
CACATATATATACTGTATATATTTATATATTTTACATATATATATATAAAATATTCTTGC
AAGCTTGAGTTTGCAGTTTCTCAAACACTACAAAGAACAAATTACACAACATCACCAGTG
ACCTTACTTCTATAGTGATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               385-497, - strand, RNAz p=0.936471

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               385-497, - strand, RNAz p=0.936471

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-557, gnl|bosTau2|chr16 (26604532-26605089)
               

               
               1-557, gnl|canFam2|chr7 (31035737-31034994)
               

               
               1-557, gnl|dasNov1|scaffold_144 (28459-27755)
               

               
               1-557, gnl|echTel1|scaffold_230334 (2737-3455)
               

               
               1-557, gnl|hg17|chr1 (167437400-167438135)
               

               
               1-557, gnl|Hg17|chr1 (167437511-167438065)
               

               
               1-557, gnl|mm7|chr1 (163208879-163208229)
               

               
               1-557, gnl|Mm7|chr1 (163208787-163208293)
               

               
               1-557, gnl|monDom2|scaffold_16 (21933018-21933719)
               

               
               1-557, gnl|oryCun1|scaffold_201105 (253250-252546)
               

               
               1-557, gnl|panTro1|chr1 (149710605-149711342)
               

               
               1-557, gnl|rheMac2|chr1 (200424296-200425043)
               

               
               1-557, gnl|rn3|chr13 (78975752-78975096)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-557, gnl|bosTau2|chr16 (26604532-26605089)
               

               
               1-557, gnl|canFam2|chr7 (31035737-31034994)
               

               
               1-557, gnl|dasNov1|scaffold_144 (28459-27755)
               

               
               1-557, gnl|echTel1|scaffold_230334 (2737-3455)
               

               
               1-557, gnl|hg17|chr1 (167437400-167438135)
               

               
               1-557, gnl|Hg17|chr1 (167437511-167438065)
               

               
               1-557, gnl|mm7|chr1 (163208879-163208229)
               

               
               1-557, gnl|Mm7|chr1 (163208787-163208293)
               

               
               1-557, gnl|monDom2|scaffold_16 (21933018-21933719)
               

               
               1-557, gnl|oryCun1|scaffold_201105 (253250-252546)
               

               
               1-557, gnl|panTro1|chr1 (149710605-149711342)
               

               
               1-557, gnl|rheMac2|chr1 (200424296-200425043)
               

               
               1-557, gnl|rn3|chr13 (78975752-78975096)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-557, gnl\|bosTau2\|chr16 (26604532-26605089)
	1-557, gnl\|canFam2\|chr7 (31035737-31034994)
	1-557, gnl\|dasNov1\|scaffold_144 (28459-27755)
	1-557, gnl\|echTel1\|scaffold_230334 (2737-3455)
	1-557, gnl\|hg17\|chr1 (167437400-167438135)
	1-557, gnl\|Hg17\|chr1 (167437511-167438065)
	1-557, gnl\|mm7\|chr1 (163208879-163208229)
	1-557, gnl\|Mm7\|chr1 (163208787-163208293)
	1-557, gnl\|monDom2\|scaffold_16 (21933018-21933719)
	1-557, gnl\|oryCun1\|scaffold_201105 (253250-252546)
	1-557, gnl\|panTro1\|chr1 (149710605-149711342)
	1-557, gnl\|rheMac2\|chr1 (200424296-200425043)
	1-557, gnl\|rn3\|chr13 (78975752-78975096)