Non-Coding RNA Search

rnmm17c_j3.y1

Sequence:


               
               ACTGACCTGAAGGTGAAGGATGTGAAGCTTCCTGTCATCACACTGAGCTTCATGCCTGGG
GTGGGCATCTTCCAATGTGTGTCCACGGGCATGACCATCACTGGCAAGAGCTTCATGGGT
GGGAACATGGAGATCATCGTGGTCCTGAACATCACAGCCACCAACCGGCTTCTGCAGGAT
GAGGAGACGGGCCTCCCCATGTTCAAGAGCGAGGGCTGTGAGGTCATCCTGGTCAGCGTG
AAGACGAACCTGCCTAGCAACATGCTCCCCAAGGTGGTCAACAAGTTCCTGGACAGCACC
CTACACAAAGTTCTCCCTGGCCTGATGTGTCCAGCCATTGATGCGGTCCTAGTGTATGTG
AATAAGAAGTGGGCCAACCTGAATGCCCCCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGACCTGAAGGTGAAGGATGTGAAGCTTCCTGTCATCACACTGAGCTTCATGCCTGGG
GTGGGCATCTTCCAATGTGTGTCCACGGGCATGACCATCACTGGCAAGAGCTTCATGGGT
GGGAACATGGAGATCATCGTGGTCCTGAACATCACAGCCACCAACCGGCTTCTGCAGGAT
GAGGAGACGGGCCTCCCCATGTTCAAGAGCGAGGGCTGTGAGGTCATCCTGGTCAGCGTG
AAGACGAACCTGCCTAGCAACATGCTCCCCAAGGTGGTCAACAAGTTCCTGGACAGCACC
CTACACAAAGTTCTCCCTGGCCTGATGTGTCCAGCCATTGATGCGGTCCTAGTGTATGTG
AATAAGAAGTGGGCCAACCTGAATGCCCCCATGCC

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               109-260, gnl|bosTau2|chr13 (47056545-47056696)
               

               
               109-260, gnl|canFam2|chr24 (25275605-25275776)
               

               
               109-260, gnl|echTel1|scaffold_323621 (40484-40313)
               

               
               109-260, gnl|hg17|chr20 (31086216-31086387)
               

               
               109-260, gnl|Hg17|chr20 (31086228-31086379)
               

               
               109-260, gnl|mm7|chr2 (153645342-153645508)
               

               
               109-260, gnl|Mm7|chr2 (153645349-153645500)
               

               
               109-260, gnl|monDom2|scaffold_6 (168844-169018)
               

               
               109-260, gnl|panTro1|chr21 (33061780-33061951)
               

               
               109-260, gnl|rheMac2|chr10 (31513963-31513792)
               

               
               109-260, gnl|rn3|chr3 (144194860-144195031)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-260, gnl|bosTau2|chr13 (47056545-47056696)
               

               
               109-260, gnl|canFam2|chr24 (25275605-25275776)
               

               
               109-260, gnl|echTel1|scaffold_323621 (40484-40313)
               

               
               109-260, gnl|hg17|chr20 (31086216-31086387)
               

               
               109-260, gnl|Hg17|chr20 (31086228-31086379)
               

               
               109-260, gnl|mm7|chr2 (153645342-153645508)
               

               
               109-260, gnl|Mm7|chr2 (153645349-153645500)
               

               
               109-260, gnl|monDom2|scaffold_6 (168844-169018)
               

               
               109-260, gnl|panTro1|chr21 (33061780-33061951)
               

               
               109-260, gnl|rheMac2|chr10 (31513963-31513792)
               

               
               109-260, gnl|rn3|chr3 (144194860-144195031)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	109-260, gnl\|bosTau2\|chr13 (47056545-47056696)
	109-260, gnl\|canFam2\|chr24 (25275605-25275776)
	109-260, gnl\|echTel1\|scaffold_323621 (40484-40313)
	109-260, gnl\|hg17\|chr20 (31086216-31086387)
	109-260, gnl\|Hg17\|chr20 (31086228-31086379)
	109-260, gnl\|mm7\|chr2 (153645342-153645508)
	109-260, gnl\|Mm7\|chr2 (153645349-153645500)
	109-260, gnl\|monDom2\|scaffold_6 (168844-169018)
	109-260, gnl\|panTro1\|chr21 (33061780-33061951)
	109-260, gnl\|rheMac2\|chr10 (31513963-31513792)
	109-260, gnl\|rn3\|chr3 (144194860-144195031)