Non-Coding RNA Search

rnmm20c_m22.y1

Sequence:


               
               CGTGCTGCGCGCTGGCGCCTTCGACGACCTGACCGAGCTCACCTACCTCTACCTGGACCA
CAACAAGGTGACCGAGCTGCCCCGAGGGCTACTCTCCCCGCTGGTCAACCTTTTCATCCT
GCAGCTCAACAACAACAAGATCCGCGAGCTGCGCGCAGGCGCCTTCCAGGGCGCCAAGGA
CCTGCGCTGGCTCTACCTGTCGGAAAACTCACTCAGTTCCCTGCAGCCCGGCTCTCTGGA
CGACGTGGAAAACCTCGCCAAGTTCTACCTGGATAGGAACCAGCTATCCAGCTACCCCTC
GGCTGCTCTGAGCAAGCTGCGGGTGGTGGAGGAGCTGAAGCTGTCCCACAACCCCCTGAA
AAGCATCCCAGACCATGCCTTCCAGTCTTTCGGCAGATACCTGGAGACCCTCTGGCTGGA
CAACACCAACCTGGAGAAGTTCTCTGACGGTGCCTTCCTGGGCGTGACCACGCTGAAACA
CGTCCATCTGGAGAACAACCGCCTGAGCCAGCTGCCCTCCAACTTCCCCTTTGACAACCT
GGAGACCCTTACCCTTACCAACAACCCCTGGAAGTGTACCTGCCAGCTTCGGGGACTTCG
GAGGTGGCTGGAAGCCAAGACCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCTGCGCGCTGGCGCCTTCGACGACCTGACCGAGCTCACCTACCTCTACCTGGACCA
CAACAAGGTGACCGAGCTGCCCCGAGGGCTACTCTCCCCGCTGGTCAACCTTTTCATCCT
GCAGCTCAACAACAACAAGATCCGCGAGCTGCGCGCAGGCGCCTTCCAGGGCGCCAAGGA
CCTGCGCTGGCTCTACCTGTCGGAAAACTCACTCAGTTCCCTGCAGCCCGGCTCTCTGGA
CGACGTGGAAAACCTCGCCAAGTTCTACCTGGATAGGAACCAGCTATCCAGCTACCCCTC
GGCTGCTCTGAGCAAGCTGCGGGTGGTGGAGGAGCTGAAGCTGTCCCACAACCCCCTGAA
AAGCATCCCAGACCATGCCTTCCAGTCTTTCGGCAGATACCTGGAGACCCTCTGGCTGGA
CAACACCAACCTGGAGAAGTTCTCTGACGGTGCCTTCCTGGGCGTGACCACGCTGAAACA
CGTCCATCTGGAGAACAACCGCCTGAGCCAGCTGCCCTCCAACTTCCCCTTTGACAACCT
GGAGACCCTTACCCTTACCAACAACCCCTGGAAGTGTACCTGCCAGCTTCGGGGACTTCG
GAGGTGGCTGGAAGCCAAGACCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|2498232|sp|Q27972|CHAD_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|2498232|sp|Q27972|CHAD_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-439, - strand, RNAz p=0.945894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-439, - strand, RNAz p=0.945894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-439, gnl|bosTau2|chr19 (28962216-28962654)
               

               
               1-439, gnl|Hg17|chr17 (45900838-45900400)
               

               
               1-439, gnl|Mm7|chr11 (94674469-94674907)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-439, gnl|bosTau2|chr19 (28962216-28962654)
               

               
               1-439, gnl|Hg17|chr17 (45900838-45900400)
               

               
               1-439, gnl|Mm7|chr11 (94674469-94674907)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-439, gnl\|bosTau2\|chr19 (28962216-28962654)
	1-439, gnl\|Hg17\|chr17 (45900838-45900400)
	1-439, gnl\|Mm7\|chr11 (94674469-94674907)