Non-Coding RNA Search

rnmm20c_n8.y1

Sequence:


               
               CCCTTTGGTTTCCAGGCCCATCTTGCTCAAGGGTTCCATTACTCTGAGCCCATATCTTTC
TGAACGCTGGAACATTTGGTCTCTTGGGTGCCCTGTACATCCAGAGTCTGCGGCTGCACT
TTTTTTTTTTCTTTCAGCATCTAAAAAAGATTTCCTCTCTCATTTCCTGAGACCCAACAG
AAAACTGGTGGTCCTGGCTTTCTGCCTTCTCACCTCCACTTCTCTCTCAAGTTTCCGTTT
TAGTTTGGCTTCAGTGGAAAATTCCACTGCAGCCTTCGGTGGATGAATGCAGCCTCTTTA
ATTATATTGAATTTACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTTGGTTTCCAGGCCCATCTTGCTCAAGGGTTCCATTACTCTGAGCCCATATCTTTC
TGAACGCTGGAACATTTGGTCTCTTGGGTGCCCTGTACATCCAGAGTCTGCGGCTGCACT
TTTTTTTTTTCTTTCAGCATCTAAAAAAGATTTCCTCTCTCATTTCCTGAGACCCAACAG
AAAACTGGTGGTCCTGGCTTTCTGCCTTCTCACCTCCACTTCTCTCTCAAGTTTCCGTTT
TAGTTTGGCTTCAGTGGAAAATTCCACTGCAGCCTTCGGTGGATGAATGCAGCCTCTTTA
ATTATATTGAATTTACAGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-319, - strand, RNAz p=0.999057
               

               
               121-313, - strand, RNAz p=0.997335

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-319, - strand, RNAz p=0.999057
               

               
               121-313, - strand, RNAz p=0.997335

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               44-319, gnl|bosTau2|chr16 (50909587-50909853)
               

               
               44-319, gnl|canFam2|chr7 (11493225-11493441)
               

               
               44-319, gnl|dasNov1|scaffold_15575 (37116-36881)
               

               
               44-319, gnl|hg17|chr1 (206438560-206438794)
               

               
               44-319, gnl|Hg17|chr1 (206438619-206438884)
               

               
               44-319, gnl|mm7|chr1 (192642510-192642293)
               

               
               44-319, gnl|Mm7|chr1 (192642455-192642203)
               

               
               44-319, gnl|oryCun1|scaffold_199075 (114440-114648)
               

               
               44-319, gnl|panTro1|chr1 (190053688-190053922)
               

               
               44-319, gnl|rheMac2|chr1 (160514326-160514092)
               

               
               44-319, gnl|rn3|chr13 (109121629-109121414)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-319, gnl|bosTau2|chr16 (50909587-50909853)
               

               
               44-319, gnl|canFam2|chr7 (11493225-11493441)
               

               
               44-319, gnl|dasNov1|scaffold_15575 (37116-36881)
               

               
               44-319, gnl|hg17|chr1 (206438560-206438794)
               

               
               44-319, gnl|Hg17|chr1 (206438619-206438884)
               

               
               44-319, gnl|mm7|chr1 (192642510-192642293)
               

               
               44-319, gnl|Mm7|chr1 (192642455-192642203)
               

               
               44-319, gnl|oryCun1|scaffold_199075 (114440-114648)
               

               
               44-319, gnl|panTro1|chr1 (190053688-190053922)
               

               
               44-319, gnl|rheMac2|chr1 (160514326-160514092)
               

               
               44-319, gnl|rn3|chr13 (109121629-109121414)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	81-319, - strand, RNAz p=0.999057
	121-313, - strand, RNAz p=0.997335

	44-319, gnl\|bosTau2\|chr16 (50909587-50909853)
	44-319, gnl\|canFam2\|chr7 (11493225-11493441)
	44-319, gnl\|dasNov1\|scaffold_15575 (37116-36881)
	44-319, gnl\|hg17\|chr1 (206438560-206438794)
	44-319, gnl\|Hg17\|chr1 (206438619-206438884)
	44-319, gnl\|mm7\|chr1 (192642510-192642293)
	44-319, gnl\|Mm7\|chr1 (192642455-192642203)
	44-319, gnl\|oryCun1\|scaffold_199075 (114440-114648)
	44-319, gnl\|panTro1\|chr1 (190053688-190053922)
	44-319, gnl\|rheMac2\|chr1 (160514326-160514092)
	44-319, gnl\|rn3\|chr13 (109121629-109121414)