Non-Coding RNA Search

rnmm22c_p20.y1

Sequence:


               
               ACATTGTATTTTTGTGTCCACTTGTTTTTAGAAAATATGTGAGGTGTCCATCCCCATACC
TGCGTCTCTTTTGCATTTCTGTGTAATGGTTCTGTGTGTTCACAGAGCGTGGTGATGTTT
AAATGATGTGGCCGGTGTAAGCGATGTGACCTCGGATGACAGTGGCTGTTCCTCACAGCT
TCCCCTGTGTTGTGAGAAACAGCTTTCCCTGTACATATGAGACGTCTAATAAAAGGCATA
TTTCTTCCTGTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATTGTATTTTTGTGTCCACTTGTTTTTAGAAAATATGTGAGGTGTCCATCCCCATACC
TGCGTCTCTTTTGCATTTCTGTGTAATGGTTCTGTGTGTTCACAGAGCGTGGTGATGTTT
AAATGATGTGGCCGGTGTAAGCGATGTGACCTCGGATGACAGTGGCTGTTCCTCACAGCT
TCCCCTGTGTTGTGAGAAACAGCTTTCCCTGTACATATGAGACGTCTAATAAAAGGCATA
TTTCTTCCTGTaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-158, - strand, RNAz p=0.977651
               

               
               118-251, + strand, RNAz p=0.857757

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, - strand, RNAz p=0.977651
               

               
               118-251, + strand, RNAz p=0.857757

Similar Transcript(s): 4 entry(ies)

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Similar Transcript(s): 4 entry(ies)

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               39-153, UMC-bend_0B01-027-e05 Day 16 Uterus from a pregnant animal bend Bos 
(gb|CO728497.1|), blast E-value=9e-24, identity=87.83% 
               

               
               39-153, BovGen_06590 normal cattle brain Bos taurus cDNA clone (gb|CO878265.1|), 
blast E-value=9e-24, identity=87.83% 
               

               
               39-153, LB00459.CR_G13 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT841388.1|), 
blast E-value=9e-24, identity=87.83% 
               

               
               39-153, LB00542.CR_M02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT859733.1|), 
blast E-value=9e-24, identity=87.83%

Similar Transcript(s): 4 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               39-153, UMC-bend_0B01-027-e05 Day 16 Uterus from a pregnant animal bend Bos 
(gb|CO728497.1|), blast E-value=9e-24, identity=87.83% 
               

               
               39-153, BovGen_06590 normal cattle brain Bos taurus cDNA clone (gb|CO878265.1|), 
blast E-value=9e-24, identity=87.83% 
               

               
               39-153, LB00459.CR_G13 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT841388.1|), 
blast E-value=9e-24, identity=87.83% 
               

               
               39-153, LB00542.CR_M02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb|DT859733.1|), 
blast E-value=9e-24, identity=87.83%

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               5' of AF196185, -
               

               
               5' of AF196185, +

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF196185, -
               

               
               5' of AF196185, +

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-251, gnl|bosTau2|chr13 (9629699-9629948)
               

               
               1-251, gnl|canFam2|chr2 (5789772-5789616)
               

               
               1-251, gnl|dasNov1|scaffold_2190 (16865-16695)
               

               
               1-251, gnl|echTel1|scaffold_291616 (147247-147075)
               

               
               1-251, gnl|fr1|chrUn (247996645-247996829)
               

               
               1-251, gnl|galGal2|chr2 (12918924-12918754)
               

               
               1-251, gnl|hg17|chr10 (34438493-34438665)
               

               
               1-251, gnl|Hg17|chr10 (34438741-34438496)
               

               
               1-251, gnl|loxAfr1|scaffold_1972 (66082-65910)
               

               
               1-251, gnl|mm7|chr8 (126220531-126220357)
               

               
               1-251, gnl|Mm7|chr8 (126220276-126220526)
               

               
               1-251, gnl|monDom2|scaffold_7 (34260953-34260798)
               

               
               1-251, gnl|panTro1|chr8 (34858970-34859142)
               

               
               1-251, gnl|rheMac2|chr9 (34294957-34295129)
               

               
               1-251, gnl|rn3|chr19 (57608529-57608348)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-251, gnl|bosTau2|chr13 (9629699-9629948)
               

               
               1-251, gnl|canFam2|chr2 (5789772-5789616)
               

               
               1-251, gnl|dasNov1|scaffold_2190 (16865-16695)
               

               
               1-251, gnl|echTel1|scaffold_291616 (147247-147075)
               

               
               1-251, gnl|fr1|chrUn (247996645-247996829)
               

               
               1-251, gnl|galGal2|chr2 (12918924-12918754)
               

               
               1-251, gnl|hg17|chr10 (34438493-34438665)
               

               
               1-251, gnl|Hg17|chr10 (34438741-34438496)
               

               
               1-251, gnl|loxAfr1|scaffold_1972 (66082-65910)
               

               
               1-251, gnl|mm7|chr8 (126220531-126220357)
               

               
               1-251, gnl|Mm7|chr8 (126220276-126220526)
               

               
               1-251, gnl|monDom2|scaffold_7 (34260953-34260798)
               

               
               1-251, gnl|panTro1|chr8 (34858970-34859142)
               

               
               1-251, gnl|rheMac2|chr9 (34294957-34295129)
               

               
               1-251, gnl|rn3|chr19 (57608529-57608348)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	39-158, - strand, RNAz p=0.977651
	118-251, + strand, RNAz p=0.857757

	39-153, UMC-bend_0B01-027-e05 Day 16 Uterus from a pregnant animal bend Bos (gb\|CO728497.1\|), blast E-value=9e-24, identity=87.83%
	39-153, BovGen_06590 normal cattle brain Bos taurus cDNA clone (gb\|CO878265.1\|), blast E-value=9e-24, identity=87.83%
	39-153, LB00459.CR_G13 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT841388.1\|), blast E-value=9e-24, identity=87.83%
	39-153, LB00542.CR_M02 GC_BGC-05 Bos taurus cDNA clone IMAGE (gb\|DT859733.1\|), blast E-value=9e-24, identity=87.83%

	1-251, gnl\|bosTau2\|chr13 (9629699-9629948)
	1-251, gnl\|canFam2\|chr2 (5789772-5789616)
	1-251, gnl\|dasNov1\|scaffold_2190 (16865-16695)
	1-251, gnl\|echTel1\|scaffold_291616 (147247-147075)
	1-251, gnl\|fr1\|chrUn (247996645-247996829)
	1-251, gnl\|galGal2\|chr2 (12918924-12918754)
	1-251, gnl\|hg17\|chr10 (34438493-34438665)
	1-251, gnl\|Hg17\|chr10 (34438741-34438496)
	1-251, gnl\|loxAfr1\|scaffold_1972 (66082-65910)
	1-251, gnl\|mm7\|chr8 (126220531-126220357)
	1-251, gnl\|Mm7\|chr8 (126220276-126220526)
	1-251, gnl\|monDom2\|scaffold_7 (34260953-34260798)
	1-251, gnl\|panTro1\|chr8 (34858970-34859142)
	1-251, gnl\|rheMac2\|chr9 (34294957-34295129)
	1-251, gnl\|rn3\|chr19 (57608529-57608348)