Non-Coding RNA Search

rnmm23c_h10.y1

Sequence:


               
               GATGAGGAGAGGGCTCTGGAGACCAAGGACCCAACCAATGGTTACTACAAGGTCCAAGGA
GTCAGTGTGAGCCTGAGCCTTGGAGAAGCCCCTGGAGGAGGCCTTTTCCCACCACCATCC
TCCCCCCTTGGGCCTCCAGGGACACCTGCCTTCTATGACTTCAACCCACATCTGGGCATG
GTACCCCCTTGCAGACTATACAGAGCCCGGGCAGGTTATCTCACCACTCCCCATCCTCGA
GCTTTTACCAGCTACATCAAACCCACATCCTTTGGACCCCTAGATCTGGGCCCTAGCACT
CCCCCCTTCCCATATGCTGCCTTCCCCACACCCAGCCATCCGCGTCTCCAGACTCATGTG
TGACATCACTCCAACTGAAGAGTCCTGGGATCTTCAACTTGCCATAATGGATTGTTCTGA
TTACTGAGGAGCCAGAACAAATTGGCGACCTTGCTCTTCGAAAACTGAACATTGAATGGA
GGGAAAGATCGTTATAATTGTCTGTGTCATTGATACACAGTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGAGGAGAGGGCTCTGGAGACCAAGGACCCAACCAATGGTTACTACAAGGTCCAAGGA
GTCAGTGTGAGCCTGAGCCTTGGAGAAGCCCCTGGAGGAGGCCTTTTCCCACCACCATCC
TCCCCCCTTGGGCCTCCAGGGACACCTGCCTTCTATGACTTCAACCCACATCTGGGCATG
GTACCCCCTTGCAGACTATACAGAGCCCGGGCAGGTTATCTCACCACTCCCCATCCTCGA
GCTTTTACCAGCTACATCAAACCCACATCCTTTGGACCCCTAGATCTGGGCCCTAGCACT
CCCCCCTTCCCATATGCTGCCTTCCCCACACCCAGCCATCCGCGTCTCCAGACTCATGTG
TGACATCACTCCAACTGAAGAGTCCTGGGATCTTCAACTTGCCATAATGGATTGTTCTGA
TTACTGAGGAGCCAGAACAAATTGGCGACCTTGCTCTTCGAAAACTGAACATTGAATGGA
GGGAAAGATCGTTATAATTGTCTGTGTCATTGATACACAGTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13938360|gb|AAH07312.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13938360|gb|AAH07312.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               105-224, - strand, RNAz p=0.882159

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-224, - strand, RNAz p=0.882159

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-523, gnl|bosTau2|chr18 (41683999-41684495)
               

               
               26-523, gnl|Hg17|chr19 (41048897-41049435)
               

               
               26-523, gnl|Mm7|chr7 (27391914-27391453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-523, gnl|bosTau2|chr18 (41683999-41684495)
               

               
               26-523, gnl|Hg17|chr19 (41048897-41049435)
               

               
               26-523, gnl|Mm7|chr7 (27391914-27391453)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	26-523, gnl\|bosTau2\|chr18 (41683999-41684495)
	26-523, gnl\|Hg17\|chr19 (41048897-41049435)
	26-523, gnl\|Mm7\|chr7 (27391914-27391453)