Non-Coding RNA Search

rnmm24c_d8.y1

Sequence:


               
               TGAGTGGCAGAGACCGGAAGCGTGCATCAAAATAATGCTTCTGGTCTTGTATCATCTTTT
ATTAGAGGATCCTAAAAAATCCCCTACTTATATATGAGTTATTATTCCTGTGTCATAGAC
TGCAGCTATGTTTGATGAGCTGCTGAAATGAAAATCTGACCGGAACCTTTTAACTATAAA
TTCCCTGTGGTTTCAAAGAAGGATGAGCTTTCTCAGCCAACTCGCTTTTGTCCTGTGAAG
AGTCACCTTTATTGTCTGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGTGGCAGAGACCGGAAGCGTGCATCAAAATAATGCTTCTGGTCTTGTATCATCTTTT
ATTAGAGGATCCTAAAAAATCCCCTACTTATATATGAGTTATTATTCCTGTGTCATAGAC
TGCAGCTATGTTTGATGAGCTGCTGAAATGAAAATCTGACCGGAACCTTTTAACTATAAA
TTCCCTGTGGTTTCAAAGAAGGATGAGCTTTCTCAGCCAACTCGCTTTTGTCCTGTGAAG
AGTCACCTTTATTGTCTGACAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-109, - strand, RNAz p=0.905783
               

               
               41-159, - strand, RNAz p=0.818578

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-109, - strand, RNAz p=0.905783
               

               
               41-159, - strand, RNAz p=0.818578

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-255, gnl|bosTau2|chr1 (75364753-75364499)
               

               
               2-255, gnl|canFam2|chr23 (47391056-47391245)
               

               
               2-255, gnl|dasNov1|scaffold_942 (74800-74626)
               

               
               2-255, gnl|hg17|chr3 (150781848-150782045)
               

               
               2-255, gnl|Hg17|chr3 (150782111-150781857)
               

               
               2-255, gnl|loxAfr1|scaffold_5080 (28654-28852)
               

               
               2-255, gnl|mm7|chr3 (57636427-57636613)
               

               
               2-255, gnl|Mm7|chr3 (57636930-57636436)
               

               
               2-255, gnl|monDom2|scaffold_28 (21151557-21151765)
               

               
               2-255, gnl|oryCun1|scaffold_169826 (15558-15363)
               

               
               2-255, gnl|panTro1|chr2 (153808321-153808518)
               

               
               2-255, gnl|rheMac2|chr2 (138213841-138213644)
               

               
               2-255, gnl|rn3|chr2 (146715700-146715865)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-255, gnl|bosTau2|chr1 (75364753-75364499)
               

               
               2-255, gnl|canFam2|chr23 (47391056-47391245)
               

               
               2-255, gnl|dasNov1|scaffold_942 (74800-74626)
               

               
               2-255, gnl|hg17|chr3 (150781848-150782045)
               

               
               2-255, gnl|Hg17|chr3 (150782111-150781857)
               

               
               2-255, gnl|loxAfr1|scaffold_5080 (28654-28852)
               

               
               2-255, gnl|mm7|chr3 (57636427-57636613)
               

               
               2-255, gnl|Mm7|chr3 (57636930-57636436)
               

               
               2-255, gnl|monDom2|scaffold_28 (21151557-21151765)
               

               
               2-255, gnl|oryCun1|scaffold_169826 (15558-15363)
               

               
               2-255, gnl|panTro1|chr2 (153808321-153808518)
               

               
               2-255, gnl|rheMac2|chr2 (138213841-138213644)
               

               
               2-255, gnl|rn3|chr2 (146715700-146715865)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	2-109, - strand, RNAz p=0.905783
	41-159, - strand, RNAz p=0.818578

	2-255, gnl\|bosTau2\|chr1 (75364753-75364499)
	2-255, gnl\|canFam2\|chr23 (47391056-47391245)
	2-255, gnl\|dasNov1\|scaffold_942 (74800-74626)
	2-255, gnl\|hg17\|chr3 (150781848-150782045)
	2-255, gnl\|Hg17\|chr3 (150782111-150781857)
	2-255, gnl\|loxAfr1\|scaffold_5080 (28654-28852)
	2-255, gnl\|mm7\|chr3 (57636427-57636613)
	2-255, gnl\|Mm7\|chr3 (57636930-57636436)
	2-255, gnl\|monDom2\|scaffold_28 (21151557-21151765)
	2-255, gnl\|oryCun1\|scaffold_169826 (15558-15363)
	2-255, gnl\|panTro1\|chr2 (153808321-153808518)
	2-255, gnl\|rheMac2\|chr2 (138213841-138213644)
	2-255, gnl\|rn3\|chr2 (146715700-146715865)