Non-Coding RNA Search

rnmm25c_d19.y1

Sequence:


               
               CCATGTTGAACATGCAGTTTGTTGTTCGGGTGAGGAGATGGGACAACTCTGTGAAGAAAT
CATCAAGGGTGATGGACCTCAAAGGCCAGATGATCTACATCATTGAATCCAGCGCGATCT
TGTTCTTGGGGTCGCCCTGTGTGGACAGACTGGAAGACTTCACGGGCCGAGGGCTCTACC
TCTCTGACATCCCCATCCACAACGCGCTGAGGGATGTGGTTCTGATTGGAGAGCAGGCCA
GGGCTCAGGACGGCCTGAAGAAGAGGCTTGGCAAGCTGAAGGCCACACTGGAGCAGGCCC
ACCAAGCGCTGGAGGAGGAGAAGAAGAAGACAGTGGACCTGCTGTGCTCCATCTTCCCCA
GCGAGGTGGCCCAGCAGCTGTGGCAGGGCCAGGTCGTGCAGGCCAAGAAGTTCAGGAATG
TCACCATGCTCTTCTCAGACATCGTGGGTTTCACGGCCATCTGCTCCCAGTGCTCGCCGC
TGCAGGTCATCACCATGCTCAACGCACTCTACACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGTTGAACATGCAGTTTGTTGTTCGGGTGAGGAGATGGGACAACTCTGTGAAGAAAT
CATCAAGGGTGATGGACCTCAAAGGCCAGATGATCTACATCATTGAATCCAGCGCGATCT
TGTTCTTGGGGTCGCCCTGTGTGGACAGACTGGAAGACTTCACGGGCCGAGGGCTCTACC
TCTCTGACATCCCCATCCACAACGCGCTGAGGGATGTGGTTCTGATTGGAGAGCAGGCCA
GGGCTCAGGACGGCCTGAAGAAGAGGCTTGGCAAGCTGAAGGCCACACTGGAGCAGGCCC
ACCAAGCGCTGGAGGAGGAGAAGAAGAAGACAGTGGACCTGCTGTGCTCCATCTTCCCCA
GCGAGGTGGCCCAGCAGCTGTGGCAGGGCCAGGTCGTGCAGGCCAAGAAGTTCAGGAATG
TCACCATGCTCTTCTCAGACATCGTGGGTTTCACGGCCATCTGCTCCCAGTGCTCGCCGC
TGCAGGTCATCACCATGCTCAACGCACTCTACACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18676402|dbj|BAB84824.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18676402|dbj|BAB84824.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-386, + strand, RNAz p=0.944312

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-386, + strand, RNAz p=0.944312

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               68-516, gnl|bosTau2|chr7 (23598566-23598118)
               

               
               68-516, gnl|canFam2|chr15 (56237726-56238257)
               

               
               68-516, gnl|danRer3|chr1 (24893854-24894358)
               

               
               68-516, gnl|dasNov1|scaffold_14817 (44186-43650)
               

               
               68-516, gnl|echTel1|scaffold_183567 (679-150)
               

               
               68-516, gnl|fr1|chrUn (117593306-117592763)
               

               
               68-516, gnl|galGal2|chr4 (21377467-21377990)
               

               
               68-516, gnl|hg17|chr4 (156991826-156992363)
               

               
               68-516, gnl|Hg17|chr4 (156991854-156992302)
               

               
               68-516, gnl|loxAfr1|scaffold_2846 (114334-114876)
               

               
               68-516, gnl|mm7|chr3 (82211168-82210630)
               

               
               68-516, gnl|Mm7|chr3 (82211135-82210687)
               

               
               68-516, gnl|monDom2|scaffold_9 (26554759-26555298)
               

               
               68-516, gnl|oryCun1|scaffold_104628 (4802-4262)
               

               
               68-516, gnl|panTro1|chr3 (174407017-174407554)
               

               
               68-516, gnl|rheMac2|chr5 (147904297-147904834)
               

               
               68-516, gnl|rn3|chr2 (173719297-173718761)
               

               
               68-516, gnl|tetNig1|chrUn_random (8292864-8293385)
               

               
               68-516, gnl|xenTro1|scaffold_93 (169402-168878)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               68-516, gnl|bosTau2|chr7 (23598566-23598118)
               

               
               68-516, gnl|canFam2|chr15 (56237726-56238257)
               

               
               68-516, gnl|danRer3|chr1 (24893854-24894358)
               

               
               68-516, gnl|dasNov1|scaffold_14817 (44186-43650)
               

               
               68-516, gnl|echTel1|scaffold_183567 (679-150)
               

               
               68-516, gnl|fr1|chrUn (117593306-117592763)
               

               
               68-516, gnl|galGal2|chr4 (21377467-21377990)
               

               
               68-516, gnl|hg17|chr4 (156991826-156992363)
               

               
               68-516, gnl|Hg17|chr4 (156991854-156992302)
               

               
               68-516, gnl|loxAfr1|scaffold_2846 (114334-114876)
               

               
               68-516, gnl|mm7|chr3 (82211168-82210630)
               

               
               68-516, gnl|Mm7|chr3 (82211135-82210687)
               

               
               68-516, gnl|monDom2|scaffold_9 (26554759-26555298)
               

               
               68-516, gnl|oryCun1|scaffold_104628 (4802-4262)
               

               
               68-516, gnl|panTro1|chr3 (174407017-174407554)
               

               
               68-516, gnl|rheMac2|chr5 (147904297-147904834)
               

               
               68-516, gnl|rn3|chr2 (173719297-173718761)
               

               
               68-516, gnl|tetNig1|chrUn_random (8292864-8293385)
               

               
               68-516, gnl|xenTro1|scaffold_93 (169402-168878)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	68-516, gnl\|bosTau2\|chr7 (23598566-23598118)
	68-516, gnl\|canFam2\|chr15 (56237726-56238257)
	68-516, gnl\|danRer3\|chr1 (24893854-24894358)
	68-516, gnl\|dasNov1\|scaffold_14817 (44186-43650)
	68-516, gnl\|echTel1\|scaffold_183567 (679-150)
	68-516, gnl\|fr1\|chrUn (117593306-117592763)
	68-516, gnl\|galGal2\|chr4 (21377467-21377990)
	68-516, gnl\|hg17\|chr4 (156991826-156992363)
	68-516, gnl\|Hg17\|chr4 (156991854-156992302)
	68-516, gnl\|loxAfr1\|scaffold_2846 (114334-114876)
	68-516, gnl\|mm7\|chr3 (82211168-82210630)
	68-516, gnl\|Mm7\|chr3 (82211135-82210687)
	68-516, gnl\|monDom2\|scaffold_9 (26554759-26555298)
	68-516, gnl\|oryCun1\|scaffold_104628 (4802-4262)
	68-516, gnl\|panTro1\|chr3 (174407017-174407554)
	68-516, gnl\|rheMac2\|chr5 (147904297-147904834)
	68-516, gnl\|rn3\|chr2 (173719297-173718761)
	68-516, gnl\|tetNig1\|chrUn_random (8292864-8293385)
	68-516, gnl\|xenTro1\|scaffold_93 (169402-168878)