Non-Coding RNA Search

rnmm25c_j6.y1

Sequence:


               
               CAGCGCCACCTGGGCCGCCATGACCCGCTGCCGCTCGATGATGAGGATGCACTTCTCGCA
GGTGCAGTCTTTGAAGCGGCAGTAGCGCTTGTGGCCCTTGAGCCAGGACAGCACGCCGTG
GTTGCGGCAGCGCGCGCACTTCGGCGTGCGCTGCAGGGGCGCCCGCGGCGGCTGCGACAC
CGGGCCGCCCATATACAGGCCTGATTTGGCAGCGCCGACCCCAAGGCCGCCTTCATTCTC
ACACTTGGCCACAGATACACCGCTCCGAGAGAACCGGAGTCTACCGGAGAGTTGTGGGTG
CACCCTGGTCCCGGCGTGAGCCAAGAGGGTTTTAAGTTGGGGGGAGCGAGGCCCGGCGGC
CACTGGCGGGGGGAGTTGGGGGAAGGGCAGTGGAATTGGTTCGAGAAATGTTAGCTTTCT
TGATTTCCTTTTGCAACTTTGTTTTTTCTTTTGCAGCTGCGGAAGACAATATTAGAAAAC
CTCTGGTCCAAGGATGACAATCCATTTTGCAGGCTACTTAACAGGGGAAACCAGTCCCTC
CTCTCTGGCGCTGAGTTTCTCTACCCTCATCCCCACGTTTTAATAAAAGTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCCACCTGGGCCGCCATGACCCGCTGCCGCTCGATGATGAGGATGCACTTCTCGCA
GGTGCAGTCTTTGAAGCGGCAGTAGCGCTTGTGGCCCTTGAGCCAGGACAGCACGCCGTG
GTTGCGGCAGCGCGCGCACTTCGGCGTGCGCTGCAGGGGCGCCCGCGGCGGCTGCGACAC
CGGGCCGCCCATATACAGGCCTGATTTGGCAGCGCCGACCCCAAGGCCGCCTTCATTCTC
ACACTTGGCCACAGATACACCGCTCCGAGAGAACCGGAGTCTACCGGAGAGTTGTGGGTG
CACCCTGGTCCCGGCGTGAGCCAAGAGGGTTTTAAGTTGGGGGGAGCGAGGCCCGGCGGC
CACTGGCGGGGGGAGTTGGGGGAAGGGCAGTGGAATTGGTTCGAGAAATGTTAGCTTTCT
TGATTTCCTTTTGCAACTTTGTTTTTTCTTTTGCAGCTGCGGAAGACAATATTAGAAAAC
CTCTGGTCCAAGGATGACAATCCATTTTGCAGGCTACTTAACAGGGGAAACCAGTCCCTC
CTCTCTGGCGCTGAGTTTCTCTACCCTCATCCCCACGTTTTAATAAAAGTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q4ZH61_9SAUR

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q4ZH61_9SAUR

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-151, gnl|bosTau2|chr3 (65936399-65936549)
               

               
               1-151, gnl|canFam2|chr11 (44596463-44596317)
               

               
               1-151, gnl|danRer3|chrNA (27910581-27910434)
               

               
               1-151, gnl|dasNov1|scaffold_6916 (94824-94678)
               

               
               1-151, gnl|echTel1|scaffold_306330 (49367-49514)
               

               
               1-151, gnl|fr1|chrUn (307081086-307080939)
               

               
               1-151, gnl|galGal2|chr8 (25116120-25116009)
               

               
               1-151, gnl|hg17|chr1 (50598835-50598982)
               

               
               1-151, gnl|Hg17|chr1 (50598885-50599035)
               

               
               1-151, gnl|loxAfr1|scaffold_1318 (108508-108361)
               

               
               1-151, gnl|mm7|chr4 (109356695-109356548)
               

               
               1-151, gnl|Mm7|chr4 (109356643-109356493)
               

               
               1-151, gnl|monDom2|scaffold_70 (3057159-3057012)
               

               
               1-151, gnl|oryCun1|scaffold_192385 (13518-13371)
               

               
               1-151, gnl|panTro1|chr1 (48803023-48803170)
               

               
               1-151, gnl|rheMac2|chr1 (53250128-53250275)
               

               
               1-151, gnl|rn3|chr5 (131417924-131417777)
               

               
               1-151, gnl|tetNig1|chr1 (10944557-10944704)
               

               
               1-151, gnl|xenTro1|scaffold_816 (496691-496544)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr3 (65936399-65936549)
               

               
               1-151, gnl|canFam2|chr11 (44596463-44596317)
               

               
               1-151, gnl|danRer3|chrNA (27910581-27910434)
               

               
               1-151, gnl|dasNov1|scaffold_6916 (94824-94678)
               

               
               1-151, gnl|echTel1|scaffold_306330 (49367-49514)
               

               
               1-151, gnl|fr1|chrUn (307081086-307080939)
               

               
               1-151, gnl|galGal2|chr8 (25116120-25116009)
               

               
               1-151, gnl|hg17|chr1 (50598835-50598982)
               

               
               1-151, gnl|Hg17|chr1 (50598885-50599035)
               

               
               1-151, gnl|loxAfr1|scaffold_1318 (108508-108361)
               

               
               1-151, gnl|mm7|chr4 (109356695-109356548)
               

               
               1-151, gnl|Mm7|chr4 (109356643-109356493)
               

               
               1-151, gnl|monDom2|scaffold_70 (3057159-3057012)
               

               
               1-151, gnl|oryCun1|scaffold_192385 (13518-13371)
               

               
               1-151, gnl|panTro1|chr1 (48803023-48803170)
               

               
               1-151, gnl|rheMac2|chr1 (53250128-53250275)
               

               
               1-151, gnl|rn3|chr5 (131417924-131417777)
               

               
               1-151, gnl|tetNig1|chr1 (10944557-10944704)
               

               
               1-151, gnl|xenTro1|scaffold_816 (496691-496544)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-151, gnl\|bosTau2\|chr3 (65936399-65936549)
	1-151, gnl\|canFam2\|chr11 (44596463-44596317)
	1-151, gnl\|danRer3\|chrNA (27910581-27910434)
	1-151, gnl\|dasNov1\|scaffold_6916 (94824-94678)
	1-151, gnl\|echTel1\|scaffold_306330 (49367-49514)
	1-151, gnl\|fr1\|chrUn (307081086-307080939)
	1-151, gnl\|galGal2\|chr8 (25116120-25116009)
	1-151, gnl\|hg17\|chr1 (50598835-50598982)
	1-151, gnl\|Hg17\|chr1 (50598885-50599035)
	1-151, gnl\|loxAfr1\|scaffold_1318 (108508-108361)
	1-151, gnl\|mm7\|chr4 (109356695-109356548)
	1-151, gnl\|Mm7\|chr4 (109356643-109356493)
	1-151, gnl\|monDom2\|scaffold_70 (3057159-3057012)
	1-151, gnl\|oryCun1\|scaffold_192385 (13518-13371)
	1-151, gnl\|panTro1\|chr1 (48803023-48803170)
	1-151, gnl\|rheMac2\|chr1 (53250128-53250275)
	1-151, gnl\|rn3\|chr5 (131417924-131417777)
	1-151, gnl\|tetNig1\|chr1 (10944557-10944704)
	1-151, gnl\|xenTro1\|scaffold_816 (496691-496544)