Non-Coding RNA Search

rnmm26c_a2.y1

Sequence:


               
               ATCAGCTCTGCTCACCTGTTGTTATCTTGGACCCCACTGAGAAGGTACCTCCTGGAGCTA
TGAAATCCCTCAGCCCGATCCTCTTCCTTGTCTTCCTCTTCGCTGGGCTGGGTTCCAAGG
CCGCCCCTGCAGCCTCACTGCCTTTGGGCTCTGACTATCCCGGGATGGGCCACTCCTCCC
AGCCCTCCCCTCGGGCTTCCGAAAATTCCACTCTCCGTGGGACTAGCCCAGAATCCCCCA
GGACTGCTTATCCTGAGCCCTTGAAGACACCTCAGGCGGTTTCCCCTGAGCCCTCCTCCC
TTGACCTCACTGAGACTACCACACCTGACCTCCGAGAAAGCCCACACCCAGAGTCTCCTG
AGACCCCCAAACCTAACTCACTCAGCACCTCAATATCAGAATCTCTGGAGGCCTCCCAAA
TTAACCTCTCCAAAATAACACACCCAGAACCTTCTGAGACCCCCAAACCTGACCCAACTG
AAATTCCACACACAGAATCCCCTGAGACCCTCAAACCCAATCCCTCCAAAACTTCACACC
CAGCATCTTCTGAGACCCCACACCCTGATCCCACTCAAACTCCATACCAAGAATCCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGCTCTGCTCACCTGTTGTTATCTTGGACCCCACTGAGAAGGTACCTCCTGGAGCTA
TGAAATCCCTCAGCCCGATCCTCTTCCTTGTCTTCCTCTTCGCTGGGCTGGGTTCCAAGG
CCGCCCCTGCAGCCTCACTGCCTTTGGGCTCTGACTATCCCGGGATGGGCCACTCCTCCC
AGCCCTCCCCTCGGGCTTCCGAAAATTCCACTCTCCGTGGGACTAGCCCAGAATCCCCCA
GGACTGCTTATCCTGAGCCCTTGAAGACACCTCAGGCGGTTTCCCCTGAGCCCTCCTCCC
TTGACCTCACTGAGACTACCACACCTGACCTCCGAGAAAGCCCACACCCAGAGTCTCCTG
AGACCCCCAAACCTAACTCACTCAGCACCTCAATATCAGAATCTCTGGAGGCCTCCCAAA
TTAACCTCTCCAAAATAACACACCCAGAACCTTCTGAGACCCCCAAACCTGACCCAACTG
AAATTCCACACACAGAATCCCCTGAGACCCTCAAACCCAATCCCTCCAAAACTTCACACC
CAGCATCTTCTGAGACCCCACACCCTGATCCCACTCAAACTCCATACCAAGAATCCCCGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               273-392, - strand, RNAz p=0.895036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               273-392, - strand, RNAz p=0.895036

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               248-389, - strand, RNAmicro p=0.993581

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               248-389, - strand, RNAmicro p=0.993581

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               43-598, gnl|bosTau2|chr18 (48572694-48573252)
               

               
               43-598, gnl|Hg17|chr19 (54621483-54622044)
               

               
               43-598, gnl|Mm7|chr7 (41354413-41353875)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-598, gnl|bosTau2|chr18 (48572694-48573252)
               

               
               43-598, gnl|Hg17|chr19 (54621483-54622044)
               

               
               43-598, gnl|Mm7|chr7 (41354413-41353875)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	43-598, gnl\|bosTau2\|chr18 (48572694-48573252)
	43-598, gnl\|Hg17\|chr19 (54621483-54622044)
	43-598, gnl\|Mm7\|chr7 (41354413-41353875)