Non-Coding RNA Search

rnmm27c_m11.y1

Sequence:


               
               AATTATAGAAATATAATGTTCGTACATGTGACTTTGGAGCTAAATTTGTGCTTAAAATAG
TTGGGAAAATGTTTTAAGTTTATGTAGACTTACAATAATATTTCCAGTAGTAACCATAAA
TTTAAACACGTGTGAAGAAATAAGAATTAGGAGCAGTCCTATTTTGGTAAATAGATATTA
AACAGTGTTTTTCTAAGAAAACCACAAAGAATTTACCCAGAGAGTTCTTCCGAATGTGGC
ATCAGGACATTGGACATGCAGTTGTTTATGTGTGCCCTCTCCAATACTTGCAAATCCGTG
ATCTTTGTTTAAGTTTTTATTTTATCGCATCTTAGGACCAAGAAGTTTTTGATTAAGAAA
CTTCTTGTTTCATTAATAATTTTAGATAATTTCATTTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTATAGAAATATAATGTTCGTACATGTGACTTTGGAGCTAAATTTGTGCTTAAAATAG
TTGGGAAAATGTTTTAAGTTTATGTAGACTTACAATAATATTTCCAGTAGTAACCATAAA
TTTAAACACGTGTGAAGAAATAAGAATTAGGAGCAGTCCTATTTTGGTAAATAGATATTA
AACAGTGTTTTTCTAAGAAAACCACAAAGAATTTACCCAGAGAGTTCTTCCGAATGTGGC
ATCAGGACATTGGACATGCAGTTGTTTATGTGTGCCCTCTCCAATACTTGCAAATCCGTG
ATCTTTGTTTAAGTTTTTATTTTATCGCATCTTAGGACCAAGAAGTTTTTGATTAAGAAA
CTTCTTGTTTCATTAATAATTTTAGATAATTTCATTTATCA

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-401, gnl|bosTau2|chr29 (37275911-37276300)
               

               
               1-401, gnl|canFam2|chr12 (16501285-16501635)
               

               
               1-401, gnl|dasNov1|scaffold_10003 (10897-10538)
               

               
               1-401, gnl|echTel1|scaffold_306085 (2813-2489)
               

               
               1-401, gnl|hg17|chr6 (45248650-45248995)
               

               
               1-401, gnl|Hg17|chr6 (45249048-45248658)
               

               
               1-401, gnl|loxAfr1|scaffold_15364 (43999-44353)
               

               
               1-401, gnl|mm7|chr17 (43007244-43006925)
               

               
               1-401, gnl|Mm7|chr17 (43006869-43007235)
               

               
               1-401, gnl|oryCun1|scaffold_200665 (5458-5809)
               

               
               1-401, gnl|panTro1|chr5 (45847866-45848210)
               

               
               1-401, gnl|rheMac2|chr4 (45080350-45080692)
               

               
               1-401, gnl|rn3|chr9 (11707910-11708224)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-401, gnl|bosTau2|chr29 (37275911-37276300)
               

               
               1-401, gnl|canFam2|chr12 (16501285-16501635)
               

               
               1-401, gnl|dasNov1|scaffold_10003 (10897-10538)
               

               
               1-401, gnl|echTel1|scaffold_306085 (2813-2489)
               

               
               1-401, gnl|hg17|chr6 (45248650-45248995)
               

               
               1-401, gnl|Hg17|chr6 (45249048-45248658)
               

               
               1-401, gnl|loxAfr1|scaffold_15364 (43999-44353)
               

               
               1-401, gnl|mm7|chr17 (43007244-43006925)
               

               
               1-401, gnl|Mm7|chr17 (43006869-43007235)
               

               
               1-401, gnl|oryCun1|scaffold_200665 (5458-5809)
               

               
               1-401, gnl|panTro1|chr5 (45847866-45848210)
               

               
               1-401, gnl|rheMac2|chr4 (45080350-45080692)
               

               
               1-401, gnl|rn3|chr9 (11707910-11708224)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-401, gnl\|bosTau2\|chr29 (37275911-37276300)
	1-401, gnl\|canFam2\|chr12 (16501285-16501635)
	1-401, gnl\|dasNov1\|scaffold_10003 (10897-10538)
	1-401, gnl\|echTel1\|scaffold_306085 (2813-2489)
	1-401, gnl\|hg17\|chr6 (45248650-45248995)
	1-401, gnl\|Hg17\|chr6 (45249048-45248658)
	1-401, gnl\|loxAfr1\|scaffold_15364 (43999-44353)
	1-401, gnl\|mm7\|chr17 (43007244-43006925)
	1-401, gnl\|Mm7\|chr17 (43006869-43007235)
	1-401, gnl\|oryCun1\|scaffold_200665 (5458-5809)
	1-401, gnl\|panTro1\|chr5 (45847866-45848210)
	1-401, gnl\|rheMac2\|chr4 (45080350-45080692)
	1-401, gnl\|rn3\|chr9 (11707910-11708224)