Non-Coding RNA Search

rnmm27c_n20.y1

Sequence:


               
               CACAAGCCTGACCACGTGTGAGTGGAAGAAAGTCTTCTATGAGAAGATGGAGGTGGCAAA
GCCCAATGACAGCTGGGAACTCATCATAGACCCCAACCTCAAGCCCAATGAGCTAGCCCC
TGGCTGGAAGCAGTACCTGGAGCAGCATGCCTCGGGCAGGTTCCACTGCACCTGGTGCTG
GCACACCTGGCAGTCGGCCAACGTGGTCATCCTCTTCCACATGCACCTGGACCGCCCCCA
GCGCATGGGGTCGGTGCGCATGCGCGTCTTCAAGCAGCTGTGCTACGAGTGCGGCACGTC
GCGGCTGGACGAGTCGAGCATGCTGGAGGAGAACATCGAGAGCCTGGTGGACAATCTCAT
CACCAGCCTGCGCGAGCAATGCTACGACGAGGATGGCGGCCAGTACCGCATCCACGTGGC
CACCCGCCCTGACAGTGGGTCTCACCGCAGCGAGTTCTGTGAGGCCTGCCAGGAGGGCAT
CGTGCACTGGAAGCCCAGTGAGAAGCTGCTGGAGGAGGAGGCAACCTTCTCCGGTGCCTC
CAAGCCAAGAGCCCAGGAGAGCTCGGGCTACAATTTCTTCTCCCTTCGCTGGTGCCTCTT
CTGGGCCTCCCTCTGCCTGCTAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAAGCCTGACCACGTGTGAGTGGAAGAAAGTCTTCTATGAGAAGATGGAGGTGGCAAA
GCCCAATGACAGCTGGGAACTCATCATAGACCCCAACCTCAAGCCCAATGAGCTAGCCCC
TGGCTGGAAGCAGTACCTGGAGCAGCATGCCTCGGGCAGGTTCCACTGCACCTGGTGCTG
GCACACCTGGCAGTCGGCCAACGTGGTCATCCTCTTCCACATGCACCTGGACCGCCCCCA
GCGCATGGGGTCGGTGCGCATGCGCGTCTTCAAGCAGCTGTGCTACGAGTGCGGCACGTC
GCGGCTGGACGAGTCGAGCATGCTGGAGGAGAACATCGAGAGCCTGGTGGACAATCTCAT
CACCAGCCTGCGCGAGCAATGCTACGACGAGGATGGCGGCCAGTACCGCATCCACGTGGC
CACCCGCCCTGACAGTGGGTCTCACCGCAGCGAGTTCTGTGAGGCCTGCCAGGAGGGCAT
CGTGCACTGGAAGCCCAGTGAGAAGCTGCTGGAGGAGGAGGCAACCTTCTCCGGTGCCTC
CAAGCCAAGAGCCCAGGAGAGCTCGGGCTACAATTTCTTCTCCCTTCGCTGGTGCCTCTT
CTGGGCCTCCCTCTGCCTGCTAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866798|ref|XP_589667.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866798|ref|XP_589667.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               310-463, - strand, RNAz p=0.800579
               

               
               435-624, + strand, RNAz p=0.950441

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-463, - strand, RNAz p=0.800579
               

               
               435-624, + strand, RNAz p=0.950441

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               156-624, gnl|bosTau2|chr1 (50771616-50772084)
               

               
               156-624, gnl|canFam2|chr34 (23095728-23096130)
               

               
               156-624, gnl|dasNov1|scaffold_32161 (8266-8672)
               

               
               156-624, gnl|hg17|chr3 (188898939-188899346)
               

               
               156-624, gnl|Hg17|chr3 (188899505-188899031)
               

               
               156-624, gnl|mm7|chr16 (23585467-23585864)
               

               
               156-624, gnl|Mm7|chr16 (23586023-23585555)
               

               
               156-624, gnl|monDom2|scaffold_162 (1121838-1122253)
               

               
               156-624, gnl|oryCun1|scaffold_188382 (48473-48080)
               

               
               156-624, gnl|panTro1|chr2 (192982207-192982614)
               

               
               156-624, gnl|rheMac2|chr2 (180039019-180039429)
               

               
               156-624, gnl|rn3|chr11 (79155899-79155496)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               156-624, gnl|bosTau2|chr1 (50771616-50772084)
               

               
               156-624, gnl|canFam2|chr34 (23095728-23096130)
               

               
               156-624, gnl|dasNov1|scaffold_32161 (8266-8672)
               

               
               156-624, gnl|hg17|chr3 (188898939-188899346)
               

               
               156-624, gnl|Hg17|chr3 (188899505-188899031)
               

               
               156-624, gnl|mm7|chr16 (23585467-23585864)
               

               
               156-624, gnl|Mm7|chr16 (23586023-23585555)
               

               
               156-624, gnl|monDom2|scaffold_162 (1121838-1122253)
               

               
               156-624, gnl|oryCun1|scaffold_188382 (48473-48080)
               

               
               156-624, gnl|panTro1|chr2 (192982207-192982614)
               

               
               156-624, gnl|rheMac2|chr2 (180039019-180039429)
               

               
               156-624, gnl|rn3|chr11 (79155899-79155496)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	310-463, - strand, RNAz p=0.800579
	435-624, + strand, RNAz p=0.950441

	156-624, gnl\|bosTau2\|chr1 (50771616-50772084)
	156-624, gnl\|canFam2\|chr34 (23095728-23096130)
	156-624, gnl\|dasNov1\|scaffold_32161 (8266-8672)
	156-624, gnl\|hg17\|chr3 (188898939-188899346)
	156-624, gnl\|Hg17\|chr3 (188899505-188899031)
	156-624, gnl\|mm7\|chr16 (23585467-23585864)
	156-624, gnl\|Mm7\|chr16 (23586023-23585555)
	156-624, gnl\|monDom2\|scaffold_162 (1121838-1122253)
	156-624, gnl\|oryCun1\|scaffold_188382 (48473-48080)
	156-624, gnl\|panTro1\|chr2 (192982207-192982614)
	156-624, gnl\|rheMac2\|chr2 (180039019-180039429)
	156-624, gnl\|rn3\|chr11 (79155899-79155496)