rnmm28c_i13.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCAGCGAGGTGTACAAGGGCTACTTCCAGGAGGGTCTGCGGCATGGATTTGGGGTCCT CGAGAGCACCCCACAGGCTCCTCAGTCCTGCAGGTACACAGGACACTGGGAGAAGGGCCA GAGGAGTGGCTATGGCATCGCAGAGGACAGTGACAGGGGTGAGCGCTATATTGGCATGTG GCAGGCTGACCAGCGCCATGGACCAGGGATCATAGTCACCCAGGCGGGCGTCTGCTTCCA GGGGACTTTCCAGGCGGACAAGATGGTGGGCCCAGGGATTCTTCTCTCCGAAGATGACTC CTTGTATGAGGGCACCTTTACCAGGGACCTGACCCTTCTGGGGAAGGGCAAGGTCACCTT CCCCAATGGCTTCACCCTGGAGGGCTCTTTTGGCAGCGGGGCAGGAGGAGGATTGCACAC CCAGGGTGTACTGGACACAGATGGCCTCCCTCCAGACCCAGGCAGCACTCGTAAGAGGCA GCTGGGTCTGGGCGCCTTCCCTGTGGAGAGCCGCTGGCAGGGCATCTGTGGCCCCTTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCAGCGAGGTGTACAAGGGCTACTTCCAGGAGGGTCTGCGGCATGGATTTGGGGTCCT CGAGAGCACCCCACAGGCTCCTCAGTCCTGCAGGTACACAGGACACTGGGAGAAGGGCCA GAGGAGTGGCTATGGCATCGCAGAGGACAGTGACAGGGGTGAGCGCTATATTGGCATGTG GCAGGCTGACCAGCGCCATGGACCAGGGATCATAGTCACCCAGGCGGGCGTCTGCTTCCA GGGGACTTTCCAGGCGGACAAGATGGTGGGCCCAGGGATTCTTCTCTCCGAAGATGACTC CTTGTATGAGGGCACCTTTACCAGGGACCTGACCCTTCTGGGGAAGGGCAAGGTCACCTT CCCCAATGGCTTCACCCTGGAGGGCTCTTTTGGCAGCGGGGCAGGAGGAGGATTGCACAC CCAGGGTGTACTGGACACAGATGGCCTCCCTCCAGACCCAGGCAGCACTCGTAAGAGGCA GCTGGGTCTGGGCGCCTTCCCTGTGGAGAGCCGCTGGCAGGGCATCTGTGGCCCCTTCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 415-505, - strand, RNAz p=0.992702 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-505, - strand, RNAz p=0.992702 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-167, gnl|bosTau2|chr22 (41195770-41195606) | |
| 1-167, gnl|canFam2|chr20 (45076615-45076432) | |
| 1-167, gnl|fr1|chrUn (88850223-88850039) | |
| 1-167, gnl|hg17|chr3 (46697705-46697901) | |
| 1-167, gnl|Hg17|chr3 (46697895-46697731) | |
| 1-167, gnl|loxAfr1|scaffold_32960 (10456-10271) | |
| 1-167, gnl|mm7|chr9 (110588174-110588005) | |
| 1-167, gnl|Mm7|chr9 (110588009-110588173) | |
| 1-167, gnl|oryCun1|scaffold_129521 (170-4) | |
| 1-167, gnl|panTro1|chr2 (48136888-48137084) | |
| 1-167, gnl|rheMac2|chr2 (89841675-89841479) | |
| 1-167, gnl|rn3|chr8 (115298548-115298371) | |
| 1-167, gnl|tetNig1|chr2 (14339561-14339742) | |
| 345-505, gnl|bosTau2|chr22 (41192495-41192337) | |
| 345-505, gnl|canFam2|chr20 (45079583-45079247) | |
| 345-505, gnl|echTel1|scaffold_237680 (3128-2820) | |
| 345-505, gnl|hg17|chr3 (46694592-46694913) | |
| 345-505, gnl|Hg17|chr3 (46694885-46694731) | |
| 345-505, gnl|loxAfr1|scaffold_32960 (14770-14413) | |
| 345-505, gnl|mm7|chr9 (110590732-110590466) | |
| 345-505, gnl|Mm7|chr9 (110590494-110590652) | |
| 345-505, gnl|monDom2|scaffold_5 (80536427-80536763) | |
| 345-505, gnl|oryCun1|scaffold_181410 (48928-48637) | |
| 345-505, gnl|panTro1|chr2 (48133778-48134099) | |
| 345-505, gnl|rheMac2|chr2 (89844787-89844468) | |
| 345-505, gnl|rn3|chr8 (115300921-115300656) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-167, gnl|bosTau2|chr22 (41195770-41195606) | |
| 1-167, gnl|canFam2|chr20 (45076615-45076432) | |
| 1-167, gnl|fr1|chrUn (88850223-88850039) | |
| 1-167, gnl|hg17|chr3 (46697705-46697901) | |
| 1-167, gnl|Hg17|chr3 (46697895-46697731) | |
| 1-167, gnl|loxAfr1|scaffold_32960 (10456-10271) | |
| 1-167, gnl|mm7|chr9 (110588174-110588005) | |
| 1-167, gnl|Mm7|chr9 (110588009-110588173) | |
| 1-167, gnl|oryCun1|scaffold_129521 (170-4) | |
| 1-167, gnl|panTro1|chr2 (48136888-48137084) | |
| 1-167, gnl|rheMac2|chr2 (89841675-89841479) | |
| 1-167, gnl|rn3|chr8 (115298548-115298371) | |
| 1-167, gnl|tetNig1|chr2 (14339561-14339742) | |
| 345-505, gnl|bosTau2|chr22 (41192495-41192337) | |
| 345-505, gnl|canFam2|chr20 (45079583-45079247) | |
| 345-505, gnl|echTel1|scaffold_237680 (3128-2820) | |
| 345-505, gnl|hg17|chr3 (46694592-46694913) | |
| 345-505, gnl|Hg17|chr3 (46694885-46694731) | |
| 345-505, gnl|loxAfr1|scaffold_32960 (14770-14413) | |
| 345-505, gnl|mm7|chr9 (110590732-110590466) | |
| 345-505, gnl|Mm7|chr9 (110590494-110590652) | |
| 345-505, gnl|monDom2|scaffold_5 (80536427-80536763) | |
| 345-505, gnl|oryCun1|scaffold_181410 (48928-48637) | |
| 345-505, gnl|panTro1|chr2 (48133778-48134099) | |
| 345-505, gnl|rheMac2|chr2 (89844787-89844468) | |
| 345-505, gnl|rn3|chr8 (115300921-115300656) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |