Non-Coding RNA Search

rnmm31c_f6.y1

Sequence:


               
               TGGGTCTCAAGAATCAGAGGCAACTTCATGGTTCTCCCAAGAACAGCCTGTTGCTCAGAG
TCCTTTCCCTTCTCTGAAGCCTCTTGGTGAGATCAAGCCTGCATCGTCGCTGGAGGGCTT
TAAGGACAGTTTTGACCCGAAGGGCCCGCCCGCAGTCAAAGTCAGCAACCCCAGAGGCTG
GGTGACCTTCGAGGAAGAAGAGGACTTTGGTGTGGCAGGGAGGTCAAGGCCCACTGGTCC
AGACTCGCGGGGTCATCAGCCGAGTTCGTCCTCTGGCTCCAAGGTGAGCTTCGGTGATGA
CTGGACTCCAGGTACCGATGTTGCTTTCTGTGTGTTGCCCACGAGAAGACCTCCTCCTCC
GCCCGTCCCCCTGCACCCACCCGGCGCCCCCGCTCCAGCACAGCCTTTCACGGCCTTGGC
GTCTAAGGCATCACCCGAGCTAGATTTGACAGAAAGATAATGTTTCGGCCGAGTAGAGCC
AAATGAATGGGGCATTCGTTCTTCATTATGTGCAATAAGTCCTTGTAAAGTGCACTGCTG
TTGTCATTGAAATACCACTATTTAATGTGTACAGAGTTGGACTATGTGTATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTCTCAAGAATCAGAGGCAACTTCATGGTTCTCCCAAGAACAGCCTGTTGCTCAGAG
TCCTTTCCCTTCTCTGAAGCCTCTTGGTGAGATCAAGCCTGCATCGTCGCTGGAGGGCTT
TAAGGACAGTTTTGACCCGAAGGGCCCGCCCGCAGTCAAAGTCAGCAACCCCAGAGGCTG
GGTGACCTTCGAGGAAGAAGAGGACTTTGGTGTGGCAGGGAGGTCAAGGCCCACTGGTCC
AGACTCGCGGGGTCATCAGCCGAGTTCGTCCTCTGGCTCCAAGGTGAGCTTCGGTGATGA
CTGGACTCCAGGTACCGATGTTGCTTTCTGTGTGTTGCCCACGAGAAGACCTCCTCCTCC
GCCCGTCCCCCTGCACCCACCCGGCGCCCCCGCTCCAGCACAGCCTTTCACGGCCTTGGC
GTCTAAGGCATCACCCGAGCTAGATTTGACAGAAAGATAATGTTTCGGCCGAGTAGAGCC
AAATGAATGGGGCATTCGTTCTTCATTATGTGCAATAAGTCCTTGTAAAGTGCACTGCTG
TTGTCATTGAAATACCACTATTTAATGTGTACAGAGTTGGACTATGTGTATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               115-234, + strand, RNAz p=0.542338

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               115-234, + strand, RNAz p=0.542338

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AF009039, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AF009039, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-463, gnl|bosTau2|chr1 (333910-333439)
               

               
               1-463, gnl|Hg17|chr21 (32925641-32925173)
               

               
               1-463, gnl|Mm7|chr16 (90988591-90988140)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-463, gnl|bosTau2|chr1 (333910-333439)
               

               
               1-463, gnl|Hg17|chr21 (32925641-32925173)
               

               
               1-463, gnl|Mm7|chr16 (90988591-90988140)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-463, gnl\|bosTau2\|chr1 (333910-333439)
	1-463, gnl\|Hg17\|chr21 (32925641-32925173)
	1-463, gnl\|Mm7\|chr16 (90988591-90988140)