Non-Coding RNA Search

rnmm31c_l2.y1

Sequence:


               
               ACTCTTCTTTCATAGACCTCATTTGACGCTAAGCAAATAATGTTAAAGAACAACCACACA
GCGGTGACTGAGTTTATTCTCCTGGGACTGACAGATCGAGCCGAGTTGCAGCCTCTCCTT
TTTGTGGTATTCCTCGTCATCTACCTTATCACAGTAATCGGCAATGTCAGCATGATTTTG
TTAATCAGAAGTGACTCAAGACTTCACACGCCAATGTACTTCTTCCTCAGCCACCTCGCC
TTTGTAGATCTCTGCTACGCCACTAACATCACTCCTCAGATGCTGGTTCATTTCTTCTCC
AAGAGAAGAACCATTTCCTTTCTTGGTTGCTTCCTACAATTCCACTTTTTCATTGCACTG
GTGATCACAGATTATTATTTGCTCACAGTGATGGCTTATGACCGCTACATGGCCATCTGC
AAACCCTTGCTGTATGGGAGCAAAATGTCCCAAAGTGTCTGCCTGGCTCTTGTTGCTACT
CCTTACATTTACGGCTTTGCCAATGGTCTAGCACAGACCATCCTGATGCTCCGCCTCTCC
TTCTGTGGACCCAATGAAATCAACCACTTCTACTGTGCTGACCCACCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTTCTTTCATAGACCTCATTTGACGCTAAGCAAATAATGTTAAAGAACAACCACACA
GCGGTGACTGAGTTTATTCTCCTGGGACTGACAGATCGAGCCGAGTTGCAGCCTCTCCTT
TTTGTGGTATTCCTCGTCATCTACCTTATCACAGTAATCGGCAATGTCAGCATGATTTTG
TTAATCAGAAGTGACTCAAGACTTCACACGCCAATGTACTTCTTCCTCAGCCACCTCGCC
TTTGTAGATCTCTGCTACGCCACTAACATCACTCCTCAGATGCTGGTTCATTTCTTCTCC
AAGAGAAGAACCATTTCCTTTCTTGGTTGCTTCCTACAATTCCACTTTTTCATTGCACTG
GTGATCACAGATTATTATTTGCTCACAGTGATGGCTTATGACCGCTACATGGCCATCTGC
AAACCCTTGCTGTATGGGAGCAAAATGTCCCAAAGTGTCTGCCTGGCTCTTGTTGCTACT
CCTTACATTTACGGCTTTGCCAATGGTCTAGCACAGACCATCCTGATGCTCCGCCTCTCC
TTCTGTGGACCCAATGAAATCAACCACTTCTACTGTGCTGACCCACCTCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57099991|ref|XP_540638.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57099991|ref|XP_540638.1|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               28-588, gnl|bosTau2|chr23 (24584400-24583841)
               

               
               28-588, gnl|Hg17|chr6 (28129933-28129375)
               

               
               28-588, gnl|Mm7|chr17 (35952443-35951919)
               


               
               35-586, gnl|bosTau2|chr10 (22285118-22284567)
               

               
               35-586, gnl|Hg17|chr14 (19681730-19682281)
               

               
               35-586, gnl|Mm7|chr14 (45229702-45229151)
               


               
               52-577, gnl|bosTau2|chr10 (14296915-14296390)
               

               
               52-577, gnl|Hg17|chr14 (22241198-22241722)
               

               
               52-577, gnl|Mm7|chr6 (116541533-116542007)
               


               
               136-491, gnl|bosTau2|chr10 (69955438-69955804)
               

               
               136-491, gnl|Hg17|chr11 (56122315-56121967)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-588, gnl|bosTau2|chr23 (24584400-24583841)
               

               
               28-588, gnl|Hg17|chr6 (28129933-28129375)
               

               
               28-588, gnl|Mm7|chr17 (35952443-35951919)
               


               
               35-586, gnl|bosTau2|chr10 (22285118-22284567)
               

               
               35-586, gnl|Hg17|chr14 (19681730-19682281)
               

               
               35-586, gnl|Mm7|chr14 (45229702-45229151)
               


               
               52-577, gnl|bosTau2|chr10 (14296915-14296390)
               

               
               52-577, gnl|Hg17|chr14 (22241198-22241722)
               

               
               52-577, gnl|Mm7|chr6 (116541533-116542007)
               


               
               136-491, gnl|bosTau2|chr10 (69955438-69955804)
               

               
               136-491, gnl|Hg17|chr11 (56122315-56121967)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	28-588, gnl\|bosTau2\|chr23 (24584400-24583841)
	28-588, gnl\|Hg17\|chr6 (28129933-28129375)
	28-588, gnl\|Mm7\|chr17 (35952443-35951919)

	35-586, gnl\|bosTau2\|chr10 (22285118-22284567)
	35-586, gnl\|Hg17\|chr14 (19681730-19682281)
	35-586, gnl\|Mm7\|chr14 (45229702-45229151)

	52-577, gnl\|bosTau2\|chr10 (14296915-14296390)
	52-577, gnl\|Hg17\|chr14 (22241198-22241722)
	52-577, gnl\|Mm7\|chr6 (116541533-116542007)

	136-491, gnl\|bosTau2\|chr10 (69955438-69955804)
	136-491, gnl\|Hg17\|chr11 (56122315-56121967)