Non-Coding RNA Search

rnmm34c_i8.y1

Sequence:


               
               TACACACCTGTGCCTCCGACAGCTGTTTCCATTGAAGGTGTTGTTGCTGATACCTCTCCC
CAGACAGTGGCACCTTCATCCCAGGACACAAGTGGGCAGCAGCAGCAGATAGCAGTGGAC
ACATCCAACGAGCATGCATCTGCATATTCTTACCAACAGTCTAAACCATAAACAATACTG
AAGAATGTCTGTCTGAAACTCGGCCTTGAATGAAGAAACTTCATTGAACAAGAAGTTGGC
TTCCAGTTTTGCACAGGCGTCAATGGAATGCTTTTCTTTTTTATTTTATTTTTTTAATTT
TCTACTTTACTCAATGAAAATGAAGTGTTTTTATGTGCTGTGCAAATGGTTCCTTCATGT
GGTTTGACAGGCTTTTTTTGCCATCTTTTTTTTTTTTTCAACTAAAGAAAAAAGATACCA
GAAGAGGACAAAAACAATAACAAACAAAGCAAAACATGGAAGATTGACATTTAAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACACACCTGTGCCTCCGACAGCTGTTTCCATTGAAGGTGTTGTTGCTGATACCTCTCCC
CAGACAGTGGCACCTTCATCCCAGGACACAAGTGGGCAGCAGCAGCAGATAGCAGTGGAC
ACATCCAACGAGCATGCATCTGCATATTCTTACCAACAGTCTAAACCATAAACAATACTG
AAGAATGTCTGTCTGAAACTCGGCCTTGAATGAAGAAACTTCATTGAACAAGAAGTTGGC
TTCCAGTTTTGCACAGGCGTCAATGGAATGCTTTTCTTTTTTATTTTATTTTTTTAATTT
TCTACTTTACTCAATGAAAATGAAGTGTTTTTATGTGCTGTGCAAATGGTTCCTTCATGT
GGTTTGACAGGCTTTTTTTGCCATCTTTTTTTTTTTTTCAACTAAAGAAAAAAGATACCA
GAAGAGGACAAAAACAATAACAAACAAAGCAAAACATGGAAGATTGACATTTAAAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61815287|ref|XP_605733.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61815287|ref|XP_605733.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-349, + strand, RNAz p=0.978222

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-349, + strand, RNAz p=0.978222

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001003792, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001003792, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               37-164, gnl|bosTau2|chr22 (1328322-1328195)
               

               
               37-164, gnl|canFam2|chr23 (17504305-17504163)
               

               
               37-164, gnl|dasNov1|scaffold_64443 (45315-45457)
               

               
               37-164, gnl|echTel1|scaffold_232886 (14649-14791)
               

               
               37-164, gnl|fr1|chrUn (27424497-27424363)
               

               
               37-164, gnl|galGal2|chr2 (38713578-38713718)
               

               
               37-164, gnl|hg17|chr3 (30007571-30007713)
               

               
               37-164, gnl|Hg17|chr3 (30007577-30007704)
               

               
               37-164, gnl|loxAfr1|scaffold_57065 (4911-4769)
               

               
               37-164, gnl|mm7|chr9 (116255200-116255058)
               

               
               37-164, gnl|Mm7|chr9 (116255192-116255065)
               

               
               37-164, gnl|monDom2|scaffold_7 (85996841-85996981)
               

               
               37-164, gnl|oryCun1|scaffold_209523 (89712-89570)
               

               
               37-164, gnl|panTro1|chr2 (30955454-30955596)
               

               
               37-164, gnl|rheMac2|chr2 (172441625-172441767)
               

               
               37-164, gnl|rn3|chr8 (121132525-121132383)
               

               
               37-164, gnl|tetNig1|chr21_random (2832510-2832646)
               

               
               37-164, gnl|xenTro1|scaffold_586 (82248-82385)
               


               
               165-471, gnl|bosTau2|chr22 (1303696-1303400)
               

               
               165-471, gnl|Hg17|chr3 (30020351-30020649)
               

               
               165-471, gnl|Mm7|chr9 (116251029-116250729)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-164, gnl|bosTau2|chr22 (1328322-1328195)
               

               
               37-164, gnl|canFam2|chr23 (17504305-17504163)
               

               
               37-164, gnl|dasNov1|scaffold_64443 (45315-45457)
               

               
               37-164, gnl|echTel1|scaffold_232886 (14649-14791)
               

               
               37-164, gnl|fr1|chrUn (27424497-27424363)
               

               
               37-164, gnl|galGal2|chr2 (38713578-38713718)
               

               
               37-164, gnl|hg17|chr3 (30007571-30007713)
               

               
               37-164, gnl|Hg17|chr3 (30007577-30007704)
               

               
               37-164, gnl|loxAfr1|scaffold_57065 (4911-4769)
               

               
               37-164, gnl|mm7|chr9 (116255200-116255058)
               

               
               37-164, gnl|Mm7|chr9 (116255192-116255065)
               

               
               37-164, gnl|monDom2|scaffold_7 (85996841-85996981)
               

               
               37-164, gnl|oryCun1|scaffold_209523 (89712-89570)
               

               
               37-164, gnl|panTro1|chr2 (30955454-30955596)
               

               
               37-164, gnl|rheMac2|chr2 (172441625-172441767)
               

               
               37-164, gnl|rn3|chr8 (121132525-121132383)
               

               
               37-164, gnl|tetNig1|chr21_random (2832510-2832646)
               

               
               37-164, gnl|xenTro1|scaffold_586 (82248-82385)
               


               
               165-471, gnl|bosTau2|chr22 (1303696-1303400)
               

               
               165-471, gnl|Hg17|chr3 (30020351-30020649)
               

               
               165-471, gnl|Mm7|chr9 (116251029-116250729)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	37-164, gnl\|bosTau2\|chr22 (1328322-1328195)
	37-164, gnl\|canFam2\|chr23 (17504305-17504163)
	37-164, gnl\|dasNov1\|scaffold_64443 (45315-45457)
	37-164, gnl\|echTel1\|scaffold_232886 (14649-14791)
	37-164, gnl\|fr1\|chrUn (27424497-27424363)
	37-164, gnl\|galGal2\|chr2 (38713578-38713718)
	37-164, gnl\|hg17\|chr3 (30007571-30007713)
	37-164, gnl\|Hg17\|chr3 (30007577-30007704)
	37-164, gnl\|loxAfr1\|scaffold_57065 (4911-4769)
	37-164, gnl\|mm7\|chr9 (116255200-116255058)
	37-164, gnl\|Mm7\|chr9 (116255192-116255065)
	37-164, gnl\|monDom2\|scaffold_7 (85996841-85996981)
	37-164, gnl\|oryCun1\|scaffold_209523 (89712-89570)
	37-164, gnl\|panTro1\|chr2 (30955454-30955596)
	37-164, gnl\|rheMac2\|chr2 (172441625-172441767)
	37-164, gnl\|rn3\|chr8 (121132525-121132383)
	37-164, gnl\|tetNig1\|chr21_random (2832510-2832646)
	37-164, gnl\|xenTro1\|scaffold_586 (82248-82385)

	165-471, gnl\|bosTau2\|chr22 (1303696-1303400)
	165-471, gnl\|Hg17\|chr3 (30020351-30020649)
	165-471, gnl\|Mm7\|chr9 (116251029-116250729)