Non-Coding RNA Search

rnmm40c_b23.y1

Sequence:


               
               GAGAAACTCCCCACTTGGGAGAGGTCACGGTGTCCCAGGTGGGCTGGGATGCCCTCCAAC
TCAACTGGACAGCTCCGGAAGGAGCCTATGAGCAGTTTCTCATTCAGGTGCAGGAGACGG
ACACGGCGGAGGCAGCCCAGAACCTCACTGTCCCAGGAGGACTGAGGTCCGTGGACCTGC
CTGGGCTCAAAGCAGGCACTCACTATAGCATCACCATCCGTGGGCTCACGCGGGACTTCA
GCACAGTCCCTCTCTCTGTTGAAGTCCTGACAGAGGAGGTTCCAGATCTGGGGAACCTCA
CGGTGACGGAGGTTAGCTGGGATGCCCTCAGACTGGACTGGACCAGCCCAGAAGGGATCT
ATGAGCAGTATGTCATTGAGGTCCAGGAGGCTGACCAGGCCAAAGAAGCTCACAGCCTCA
CAGTTCCTGGCAGCCAGCGCTCCATGGAAATCCCAGGCCTCCGGGCTGGGACTCCTTACA
CAATCACCCTGCATGGCGAGGTCAGGGGCCACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAACTCCCCACTTGGGAGAGGTCACGGTGTCCCAGGTGGGCTGGGATGCCCTCCAAC
TCAACTGGACAGCTCCGGAAGGAGCCTATGAGCAGTTTCTCATTCAGGTGCAGGAGACGG
ACACGGCGGAGGCAGCCCAGAACCTCACTGTCCCAGGAGGACTGAGGTCCGTGGACCTGC
CTGGGCTCAAAGCAGGCACTCACTATAGCATCACCATCCGTGGGCTCACGCGGGACTTCA
GCACAGTCCCTCTCTCTGTTGAAGTCCTGACAGAGGAGGTTCCAGATCTGGGGAACCTCA
CGGTGACGGAGGTTAGCTGGGATGCCCTCAGACTGGACTGGACCAGCCCAGAAGGGATCT
ATGAGCAGTATGTCATTGAGGTCCAGGAGGCTGACCAGGCCAAAGAAGCTCACAGCCTCA
CAGTTCCTGGCAGCCAGCGCTCCATGGAAATCCCAGGCCTCCGGGCTGGGACTCCTTACA
CAATCACCCTGCATGGCGAGGTCAGGGGCCACAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-117, + strand, RNAz p=0.989367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, + strand, RNAz p=0.989367

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-273, gnl|bosTau2|chr8 (56634902-56635174)
               

               
               1-273, gnl|canFam2|chr11 (72147077-72147291)
               

               
               1-273, gnl|dasNov1|scaffold_87017 (3031-2817)
               

               
               1-273, gnl|echTel1|scaffold_316768 (178730-178940)
               

               
               1-273, gnl|galGal2|chr17 (8273091-8272877)
               

               
               1-273, gnl|hg17|chr9 (114905623-114905837)
               

               
               1-273, gnl|Hg17|chr9 (114905901-114905629)
               

               
               1-273, gnl|loxAfr1|scaffold_4509 (14221-14435)
               

               
               1-273, gnl|mm7|chr4 (63433603-63433817)
               

               
               1-273, gnl|Mm7|chr4 (63433881-63433609)
               

               
               1-273, gnl|monDom2|scaffold_38 (5151348-5151547)
               

               
               1-273, gnl|oryCun1|scaffold_184408 (103976-104186)
               

               
               1-273, gnl|panTro1|chr11 (99451364-99451578)
               

               
               1-273, gnl|rheMac2|chr15 (21022707-21022493)
               

               
               1-273, gnl|xenTro1|scaffold_19088 (3545-3331)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-273, gnl|bosTau2|chr8 (56634902-56635174)
               

               
               1-273, gnl|canFam2|chr11 (72147077-72147291)
               

               
               1-273, gnl|dasNov1|scaffold_87017 (3031-2817)
               

               
               1-273, gnl|echTel1|scaffold_316768 (178730-178940)
               

               
               1-273, gnl|galGal2|chr17 (8273091-8272877)
               

               
               1-273, gnl|hg17|chr9 (114905623-114905837)
               

               
               1-273, gnl|Hg17|chr9 (114905901-114905629)
               

               
               1-273, gnl|loxAfr1|scaffold_4509 (14221-14435)
               

               
               1-273, gnl|mm7|chr4 (63433603-63433817)
               

               
               1-273, gnl|Mm7|chr4 (63433881-63433609)
               

               
               1-273, gnl|monDom2|scaffold_38 (5151348-5151547)
               

               
               1-273, gnl|oryCun1|scaffold_184408 (103976-104186)
               

               
               1-273, gnl|panTro1|chr11 (99451364-99451578)
               

               
               1-273, gnl|rheMac2|chr15 (21022707-21022493)
               

               
               1-273, gnl|xenTro1|scaffold_19088 (3545-3331)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	1-273, gnl\|bosTau2\|chr8 (56634902-56635174)
	1-273, gnl\|canFam2\|chr11 (72147077-72147291)
	1-273, gnl\|dasNov1\|scaffold_87017 (3031-2817)
	1-273, gnl\|echTel1\|scaffold_316768 (178730-178940)
	1-273, gnl\|galGal2\|chr17 (8273091-8272877)
	1-273, gnl\|hg17\|chr9 (114905623-114905837)
	1-273, gnl\|Hg17\|chr9 (114905901-114905629)
	1-273, gnl\|loxAfr1\|scaffold_4509 (14221-14435)
	1-273, gnl\|mm7\|chr4 (63433603-63433817)
	1-273, gnl\|Mm7\|chr4 (63433881-63433609)
	1-273, gnl\|monDom2\|scaffold_38 (5151348-5151547)
	1-273, gnl\|oryCun1\|scaffold_184408 (103976-104186)
	1-273, gnl\|panTro1\|chr11 (99451364-99451578)
	1-273, gnl\|rheMac2\|chr15 (21022707-21022493)
	1-273, gnl\|xenTro1\|scaffold_19088 (3545-3331)