Non-Coding RNA Search

rnmm40c_g23.y1

Sequence:


               
               TTTCACAAACACTATTTAATCTTTATTACTATGGATTTTATATTCTCTCAAGAAGATTTA
GATGAATGTTGCATGGTACTGTGGATATATGCCGGGGGAAACATTAGTTCCAGAGATAAC
GATATGACTACAAGTGTTATAATTTAAGTGCTAGTAGTGAGAAAACCAGGTACCCTGAGA
GTGGAAACTAGAGGAACGTGGATAAGTCTGCAGGGTCAGAGGAGTTTACTCTGAGGAAGT
CTCATTGAAGCTGATAGGTGTGCAAAGCATAGAAACTTGCAAAGGAGGAAGTTGTAGATA
ACGTTCAAGACAGAAAAATATGAGTCAAGAAAAATACCATTTTTTGAAATTTCTGGTTAC
TTAATATTTTATAGGTGGTTTAGGTCCTAAAGGACACATATGACGCCCTTTGCAGTCCTA
CGGCCATCTTAAATATCTTCTAAGAACATGCCTCCATAGGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCACAAACACTATTTAATCTTTATTACTATGGATTTTATATTCTCTCAAGAAGATTTA
GATGAATGTTGCATGGTACTGTGGATATATGCCGGGGGAAACATTAGTTCCAGAGATAAC
GATATGACTACAAGTGTTATAATTTAAGTGCTAGTAGTGAGAAAACCAGGTACCCTGAGA
GTGGAAACTAGAGGAACGTGGATAAGTCTGCAGGGTCAGAGGAGTTTACTCTGAGGAAGT
CTCATTGAAGCTGATAGGTGTGCAAAGCATAGAAACTTGCAAAGGAGGAAGTTGTAGATA
ACGTTCAAGACAGAAAAATATGAGTCAAGAAAAATACCATTTTTTGAAATTTCTGGTTAC
TTAATATTTTATAGGTGGTTTAGGTCCTAAAGGACACATATGACGCCCTTTGCAGTCCTA
CGGCCATCTTAAATATCTTCTAAGAACATGCCTCCATAGGAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-277, + strand, RNAz p=0.972791

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-277, + strand, RNAz p=0.972791

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_004262, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_004262, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               9-464, gnl|bosTau2|chr6 (43755821-43755358)
               

               
               9-464, gnl|Hg17|chr4 (68516684-68516217)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-464, gnl|bosTau2|chr6 (43755821-43755358)
               

               
               9-464, gnl|Hg17|chr4 (68516684-68516217)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	9-464, gnl\|bosTau2\|chr6 (43755821-43755358)
	9-464, gnl\|Hg17\|chr4 (68516684-68516217)