Non-Coding RNA Search

rnms07_g19.y1

Sequence:


               
               ATACTGTGAAAGGGCTGCAGCTCTCTGTGCCTGCCTCCGAAGGAAAACTTGGTTTCTCTT
GCACCAAACTATCCTTCTTTGATTTATTCTCTTCTTCCCTCAATTATACTTCTTCATTTT
GTCACACTGCCCAGTGCATATCATTCTTGGAGGAGTAATCTTAGCTTATGCTGGACTCCT
GT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACTGTGAAAGGGCTGCAGCTCTCTGTGCCTGCCTCCGAAGGAAAACTTGGTTTCTCTT
GCACCAAACTATCCTTCTTTGATTTATTCTCTTCTTCCCTCAATTATACTTCTTCATTTT
GTCACACTGCCCAGTGCATATCATTCTTGGAGGAGTAATCTTAGCTTATGCTGGACTCCT
GT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-182, gnl|bosTau2|chr2 (73746129-73745950)
               

               
               1-182, gnl|canFam2|chr25 (46640435-46640801)
               

               
               1-182, gnl|dasNov1|scaffold_24275 (40434-40086)
               

               
               1-182, gnl|echTel1|scaffold_310038 (70043-70513)
               

               
               1-182, gnl|hg17|chr2 (232477414-232477763)
               

               
               1-182, gnl|Hg17|chr2 (232477493-232477670)
               

               
               1-182, gnl|mm7|chr1 (86488626-86488988)
               

               
               1-182, gnl|Mm7|chr1 (86488703-86488875)
               

               
               1-182, gnl|panTro1|chr13 (123107689-123108038)
               

               
               1-182, gnl|rheMac2|chr12 (95665850-95666196)
               

               
               1-182, gnl|rn3|chr9 (85542607-85542964)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-182, gnl|bosTau2|chr2 (73746129-73745950)
               

               
               1-182, gnl|canFam2|chr25 (46640435-46640801)
               

               
               1-182, gnl|dasNov1|scaffold_24275 (40434-40086)
               

               
               1-182, gnl|echTel1|scaffold_310038 (70043-70513)
               

               
               1-182, gnl|hg17|chr2 (232477414-232477763)
               

               
               1-182, gnl|Hg17|chr2 (232477493-232477670)
               

               
               1-182, gnl|mm7|chr1 (86488626-86488988)
               

               
               1-182, gnl|Mm7|chr1 (86488703-86488875)
               

               
               1-182, gnl|panTro1|chr13 (123107689-123108038)
               

               
               1-182, gnl|rheMac2|chr12 (95665850-95666196)
               

               
               1-182, gnl|rn3|chr9 (85542607-85542964)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nms (0.213858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)

	1-182, gnl\|bosTau2\|chr2 (73746129-73745950)
	1-182, gnl\|canFam2\|chr25 (46640435-46640801)
	1-182, gnl\|dasNov1\|scaffold_24275 (40434-40086)
	1-182, gnl\|echTel1\|scaffold_310038 (70043-70513)
	1-182, gnl\|hg17\|chr2 (232477414-232477763)
	1-182, gnl\|Hg17\|chr2 (232477493-232477670)
	1-182, gnl\|mm7\|chr1 (86488626-86488988)
	1-182, gnl\|Mm7\|chr1 (86488703-86488875)
	1-182, gnl\|panTro1\|chr13 (123107689-123108038)
	1-182, gnl\|rheMac2\|chr12 (95665850-95666196)
	1-182, gnl\|rn3\|chr9 (85542607-85542964)