Non-Coding RNA Search

rnms08_k16.y1

Sequence:


               
               GGAAAAGACTCTCAAAAACTGTCAAGAGCTATAAATTAGATATTTGAATTATTCCCCCAA
TCTATATAAAAGAGCTGTCCAACTTTCCAGTGCTAAAATGCTTTAATTCACAAGACTTAT
GCCTTAGGGGACTAGAAGATTTGCCTCTGAGTCAGATGAACACATGGGTTATACATTATT
GATTATACAGTCTAAGGCTTGGGGATCAGATAAATTGAACTAAATCCTAAAGCTGACTGA
TACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAAGACTCTCAAAAACTGTCAAGAGCTATAAATTAGATATTTGAATTATTCCCCCAA
TCTATATAAAAGAGCTGTCCAACTTTCCAGTGCTAAAATGCTTTAATTCACAAGACTTAT
GCCTTAGGGGACTAGAAGATTTGCCTCTGAGTCAGATGAACACATGGGTTATACATTATT
GATTATACAGTCTAAGGCTTGGGGATCAGATAAATTGAACTAAATCCTAAAGCTGACTGA
TACAT

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-245, gnl|bosTau2|chr20 (16751316-16751557)
               

               
               1-245, gnl|canFam2|chr4 (69546902-69546314)
               

               
               1-245, gnl|dasNov1|scaffold_3211 (14144-14691)
               

               
               1-245, gnl|hg17|chr5 (43743463-43744037)
               

               
               1-245, gnl|Hg17|chr5 (43743808-43743574)
               

               
               1-245, gnl|loxAfr1|scaffold_12109 (43575-43000)
               

               
               1-245, gnl|mm7|chr13 (116541492-116540877)
               

               
               1-245, gnl|Mm7|chr13 (116541140-116541377)
               

               
               1-245, gnl|monDom2|scaffold_20 (27010819-27010259)
               

               
               1-245, gnl|oryCun1|scaffold_213244 (83614-84199)
               

               
               1-245, gnl|panTro1|chr4 (72776329-72775756)
               

               
               1-245, gnl|rheMac2|chr6 (43650822-43651392)
               

               
               1-245, gnl|rn3|chr2 (51421241-51420624)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr20 (16751316-16751557)
               

               
               1-245, gnl|canFam2|chr4 (69546902-69546314)
               

               
               1-245, gnl|dasNov1|scaffold_3211 (14144-14691)
               

               
               1-245, gnl|hg17|chr5 (43743463-43744037)
               

               
               1-245, gnl|Hg17|chr5 (43743808-43743574)
               

               
               1-245, gnl|loxAfr1|scaffold_12109 (43575-43000)
               

               
               1-245, gnl|mm7|chr13 (116541492-116540877)
               

               
               1-245, gnl|Mm7|chr13 (116541140-116541377)
               

               
               1-245, gnl|monDom2|scaffold_20 (27010819-27010259)
               

               
               1-245, gnl|oryCun1|scaffold_213244 (83614-84199)
               

               
               1-245, gnl|panTro1|chr4 (72776329-72775756)
               

               
               1-245, gnl|rheMac2|chr6 (43650822-43651392)
               

               
               1-245, gnl|rn3|chr2 (51421241-51420624)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nms (0.213858)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)

	1-245, gnl\|bosTau2\|chr20 (16751316-16751557)
	1-245, gnl\|canFam2\|chr4 (69546902-69546314)
	1-245, gnl\|dasNov1\|scaffold_3211 (14144-14691)
	1-245, gnl\|hg17\|chr5 (43743463-43744037)
	1-245, gnl\|Hg17\|chr5 (43743808-43743574)
	1-245, gnl\|loxAfr1\|scaffold_12109 (43575-43000)
	1-245, gnl\|mm7\|chr13 (116541492-116540877)
	1-245, gnl\|Mm7\|chr13 (116541140-116541377)
	1-245, gnl\|monDom2\|scaffold_20 (27010819-27010259)
	1-245, gnl\|oryCun1\|scaffold_213244 (83614-84199)
	1-245, gnl\|panTro1\|chr4 (72776329-72775756)
	1-245, gnl\|rheMac2\|chr6 (43650822-43651392)
	1-245, gnl\|rn3\|chr2 (51421241-51420624)