rnms20_l9.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ttttgtccttttagggctacatctgtggcatatggaagtccaaggctagggtcaaatcag aactgcagctgccagcctataccacagctcacagcaatgccaaatccttaacccactgag caaggccaggaatcaaactcactttctcatggatactagtaggtttcatagtccactgag ctacaaaaggaactccCTAGTGGACAATCTTGGCTTAAAAATACCTAACACCTTTGTGGG GGGGGAGTGAAGTGGGAACCCAGAGCATGAGCCCTGAGATCTAGAAACCCTCTTGGAAAT GGGTCCCATCAAGAAAAGATGATTTCATCAATTAAGGAAAACCTAGACTCTTGTGGAGAA AATTCAGCAAGCCTTCAGCAGTGCACCCTTTCCTCTTTTAGGAAATAGAGAACACTGAAT AAACAGAATGTAGGAAATATTAGCATGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ttttgtccttttagggctacatctgtggcatatggaagtccaaggctagggtcaaatcag aactgcagctgccagcctataccacagctcacagcaatgccaaatccttaacccactgag caaggccaggaatcaaactcactttctcatggatactagtaggtttcatagtccactgag ctacaaaaggaactccCTAGTGGACAATCTTGGCTTAAAAATACCTAACACCTTTGTGGG GGGGGAGTGAAGTGGGAACCCAGAGCATGAGCCCTGAGATCTAGAAACCCTCTTGGAAAT GGGTCCCATCAAGAAAAGATGATTTCATCAATTAAGGAAAACCTAGACTCTTGTGGAGAA AATTCAGCAAGCCTTCAGCAGTGCACCCTTTCCTCTTTTAGGAAATAGAGAACACTGAAT AAACAGAATGTAGGAAATATTAGCATGTGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 235-351, - strand, RNAz p=0.827212 | |
| 337-447, - strand, RNAz p=0.984779 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 235-351, - strand, RNAz p=0.827212 | |
| 337-447, - strand, RNAz p=0.984779 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 197-450, gnl|bosTau2|chr8 (21605864-21606111) | |
| 197-450, gnl|canFam2|chr1 (92026048-92025777) | |
| 197-450, gnl|canFam2|chr1 (92025376-92026048) | |
| 197-450, gnl|canFam2|chr1 (92025828-92026048) | |
| 197-450, gnl|dasNov1|scaffold_544 (165345-165619) | |
| 197-450, gnl|dasNov1|scaffold_544 (166021-165345) | |
| 197-450, gnl|dasNov1|scaffold_544 (165568-165345) | |
| 197-450, gnl|hg17|chr9 (68256969-68257265) | |
| 197-450, gnl|hg17|chr9 (67140688-67141380) | |
| 197-450, gnl|hg17|chr9 (66902162-66902400) | |
| 197-450, gnl|Hg17|chr9 (68257146-68256895) | |
| 197-450, gnl|mm7|chr19 (24498213-24497978) | |
| 197-450, gnl|mm7|chr19 (24497586-24498213) | |
| 197-450, gnl|mm7|chr19 (24498013-24498213) | |
| 197-450, gnl|Mm7|chr19 (24498068-24498279) | |
| 197-450, gnl|monDom2|scaffold_17 (21836969-21836680) | |
| 197-450, gnl|monDom2|scaffold_17 (21836263-21836969) | |
| 197-450, gnl|monDom2|scaffold_17 (21836733-21836969) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35111-35373) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35779-35111) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35322-35111) | |
| 197-450, gnl|panTro1|chr11 (52010561-52010857) | |
| 197-450, gnl|panTro1|chr11 (52011255-52010561) | |
| 197-450, gnl|panTro1|chr11 (52010799-52010561) | |
| 197-450, gnl|rheMac2|chr15 (77193666-77193952) | |
| 197-450, gnl|rheMac2|chr15 (77194348-77193666) | |
| 197-450, gnl|rheMac2|chr15 (77193904-77193666) | |
| 197-450, gnl|rn3|chr1 (228397745-228397517) | |
| 197-450, gnl|rn3|chr1 (228397112-228397745) | |
| 197-450, gnl|rn3|chr1 (228397545-228397745) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-450, gnl|bosTau2|chr8 (21605864-21606111) | |
| 197-450, gnl|canFam2|chr1 (92026048-92025777) | |
| 197-450, gnl|canFam2|chr1 (92025376-92026048) | |
| 197-450, gnl|canFam2|chr1 (92025828-92026048) | |
| 197-450, gnl|dasNov1|scaffold_544 (165345-165619) | |
| 197-450, gnl|dasNov1|scaffold_544 (166021-165345) | |
| 197-450, gnl|dasNov1|scaffold_544 (165568-165345) | |
| 197-450, gnl|hg17|chr9 (68256969-68257265) | |
| 197-450, gnl|hg17|chr9 (67140688-67141380) | |
| 197-450, gnl|hg17|chr9 (66902162-66902400) | |
| 197-450, gnl|Hg17|chr9 (68257146-68256895) | |
| 197-450, gnl|mm7|chr19 (24498213-24497978) | |
| 197-450, gnl|mm7|chr19 (24497586-24498213) | |
| 197-450, gnl|mm7|chr19 (24498013-24498213) | |
| 197-450, gnl|Mm7|chr19 (24498068-24498279) | |
| 197-450, gnl|monDom2|scaffold_17 (21836969-21836680) | |
| 197-450, gnl|monDom2|scaffold_17 (21836263-21836969) | |
| 197-450, gnl|monDom2|scaffold_17 (21836733-21836969) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35111-35373) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35779-35111) | |
| 197-450, gnl|oryCun1|scaffold_200074 (35322-35111) | |
| 197-450, gnl|panTro1|chr11 (52010561-52010857) | |
| 197-450, gnl|panTro1|chr11 (52011255-52010561) | |
| 197-450, gnl|panTro1|chr11 (52010799-52010561) | |
| 197-450, gnl|rheMac2|chr15 (77193666-77193952) | |
| 197-450, gnl|rheMac2|chr15 (77194348-77193666) | |
| 197-450, gnl|rheMac2|chr15 (77193904-77193666) | |
| 197-450, gnl|rn3|chr1 (228397745-228397517) | |
| 197-450, gnl|rn3|chr1 (228397112-228397745) | |
| 197-450, gnl|rn3|chr1 (228397545-228397745) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) |