rnms3633b_o13.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGGTGCAAATATTTGGCAGACAGAGTGCAATTTTCACCATATCAGGCAAAATGGACTGA TACAAATGTTCAGCTTCTGCTTCTTCGAGTACCTTATCCCAGAAATCAACCAGAGCTGTA AAGTCCCATTTCTTAGAATATGCCACATTGTATTTCAGAATAGCATCCTTCAGGTTTTGG GGTCGAGTGAATTTGTTGAGAAGTGCAGTTTGAATGAGCTCCCACCGGCTCCCTGCAGTT CGCTCACCATTCTCATCTTCCACTGGGTATAAGTTTTGCTCTGAACAAGGCATCTTAACA TGCTTGTTGTCCCACAAATCTTTAAAATGTGTTGGAAAAGGTTTAGGAACTTCTCCTGCT CGCAAAAGATCTACCCGAACAGTCACTGTGTGATTGGCAGATGGTCTCAGGAGAGGCAGC CGAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGGTGCAAATATTTGGCAGACAGAGTGCAATTTTCACCATATCAGGCAAAATGGACTGA TACAAATGTTCAGCTTCTGCTTCTTCGAGTACCTTATCCCAGAAATCAACCAGAGCTGTA AAGTCCCATTTCTTAGAATATGCCACATTGTATTTCAGAATAGCATCCTTCAGGTTTTGG GGTCGAGTGAATTTGTTGAGAAGTGCAGTTTGAATGAGCTCCCACCGGCTCCCTGCAGTT CGCTCACCATTCTCATCTTCCACTGGGTATAAGTTTTGCTCTGAACAAGGCATCTTAACA TGCTTGTTGTCCCACAAATCTTTAAAATGTGTTGGAAAAGGTTTAGGAACTTCTCCTGCT CGCAAAAGATCTACCCGAACAGTCACTGTGTGATTGGCAGATGGTCTCAGGAGAGGCAGC CGAGTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 252-371, + strand, RNAz p=0.579109 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 252-371, + strand, RNAz p=0.579109 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 252-379, gnl|bosTau2|chr28 (33785333-33785206) | |
| 252-379, gnl|canFam2|chr28 (4751209-4751369) | |
| 252-379, gnl|canFam2|chr28 (4751201-4751381) | |
| 252-379, gnl|canFam2|chr28 (4751369-4751201) | |
| 252-379, gnl|danRer3|chr13 (30064488-30064354) | |
| 252-379, gnl|danRer3|chr13 (30064491-30064354) | |
| 252-379, gnl|danRer3|chr13 (30064354-30064491) | |
| 252-379, gnl|galGal2|chr6 (2257079-2256888) | |
| 252-379, gnl|galGal2|chr6 (2256923-2257079) | |
| 252-379, gnl|hg17|chr10 (50800597-50800755) | |
| 252-379, gnl|hg17|chr10 (51022246-51022424) | |
| 252-379, gnl|hg17|chr10 (51312361-51312527) | |
| 252-379, gnl|Hg17|chr10 (51312515-51312388) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86016-86178) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86008-86190) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86178-86008) | |
| 252-379, gnl|mm7|chr14 (29644097-29643936) | |
| 252-379, gnl|mm7|chr14 (29644105-29643925) | |
| 252-379, gnl|mm7|chr14 (29643936-29644105) | |
| 252-379, gnl|Mm7|chr14 (29644093-29643966) | |
| 252-379, gnl|monDom2|scaffold_14 (21536606-21536765) | |
| 252-379, gnl|monDom2|scaffold_14 (21536598-21536777) | |
| 252-379, gnl|monDom2|scaffold_14 (21536758-21536598) | |
| 252-379, gnl|panTro1|chr8 (51718672-51718494) | |
| 252-379, gnl|panTro1|chr8 (51718506-51718672) | |
| 252-379, gnl|panTro1|chr8_random (32948324-32948166) | |
| 252-379, gnl|rheMac2|chr9 (46693151-46692993) | |
| 252-379, gnl|rheMac2|chr9 (46693159-46692981) | |
| 252-379, gnl|rheMac2|chr9 (46692993-46693159) | |
| 252-379, gnl|rn3|chr16 (7701861-7701699) | |
| 252-379, gnl|rn3|chr16 (7701869-7701687) | |
| 252-379, gnl|rn3|chr16 (7701699-7701869) | |
| 252-379, gnl|tetNig1|chr2_random (1506278-1506443) | |
| 252-379, gnl|tetNig1|chr2_random (1506280-1506443) | |
| 252-379, gnl|tetNig1|chr2_random (1506443-1506280) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 252-379, gnl|bosTau2|chr28 (33785333-33785206) | |
| 252-379, gnl|canFam2|chr28 (4751209-4751369) | |
| 252-379, gnl|canFam2|chr28 (4751201-4751381) | |
| 252-379, gnl|canFam2|chr28 (4751369-4751201) | |
| 252-379, gnl|danRer3|chr13 (30064488-30064354) | |
| 252-379, gnl|danRer3|chr13 (30064491-30064354) | |
| 252-379, gnl|danRer3|chr13 (30064354-30064491) | |
| 252-379, gnl|galGal2|chr6 (2257079-2256888) | |
| 252-379, gnl|galGal2|chr6 (2256923-2257079) | |
| 252-379, gnl|hg17|chr10 (50800597-50800755) | |
| 252-379, gnl|hg17|chr10 (51022246-51022424) | |
| 252-379, gnl|hg17|chr10 (51312361-51312527) | |
| 252-379, gnl|Hg17|chr10 (51312515-51312388) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86016-86178) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86008-86190) | |
| 252-379, gnl|loxAfr1|scaffold_1906 (86178-86008) | |
| 252-379, gnl|mm7|chr14 (29644097-29643936) | |
| 252-379, gnl|mm7|chr14 (29644105-29643925) | |
| 252-379, gnl|mm7|chr14 (29643936-29644105) | |
| 252-379, gnl|Mm7|chr14 (29644093-29643966) | |
| 252-379, gnl|monDom2|scaffold_14 (21536606-21536765) | |
| 252-379, gnl|monDom2|scaffold_14 (21536598-21536777) | |
| 252-379, gnl|monDom2|scaffold_14 (21536758-21536598) | |
| 252-379, gnl|panTro1|chr8 (51718672-51718494) | |
| 252-379, gnl|panTro1|chr8 (51718506-51718672) | |
| 252-379, gnl|panTro1|chr8_random (32948324-32948166) | |
| 252-379, gnl|rheMac2|chr9 (46693151-46692993) | |
| 252-379, gnl|rheMac2|chr9 (46693159-46692981) | |
| 252-379, gnl|rheMac2|chr9 (46692993-46693159) | |
| 252-379, gnl|rn3|chr16 (7701861-7701699) | |
| 252-379, gnl|rn3|chr16 (7701869-7701687) | |
| 252-379, gnl|rn3|chr16 (7701699-7701869) | |
| 252-379, gnl|tetNig1|chr2_random (1506278-1506443) | |
| 252-379, gnl|tetNig1|chr2_random (1506280-1506443) | |
| 252-379, gnl|tetNig1|chr2_random (1506443-1506280) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) |