Non-Coding RNA Search

rova001_i23.y1

Sequence:


               
               GAAATGTTGTTTGCTCATGCCTTCAGAAAAGGGACATCCATCGACATGACAGTTGGGGGT
AACAGGAAAACAGTATTTTTCATCCGGCTTTTTATTTTGCATCAACTCCTTCAAGAGGAA
GGCACAACACTCAATAATAATCGCAGGAACGGGTGTCTGCAAGGGGTGAGGGGCTGAGTT
AACGAGATCCAGATTTGGAACTTGCTGATGGTATAACTTTCTAACTTGATGGAAGGATAA
GGATGCTGAATAGAGATGAATGGCGAGCCAGGCCTTAAATAGGATTTCTCTCTTTCTGGT
TTTGAAGGGAAGTCAGAGAGCAGCCAATTTAAGGTGTTATTTCAGAAGTGAGTCCATGCC
ATGTTCTAGGTAGGAAGGACACCAGGCAGGCAGGTGGCAGGCTGACGTCAAAAAAATCCT
GAAATTGGAAGAAGCTACATCTTGTCTGTGGGTCATTCCACTTTGACTGCTTCTCCATAC
ACAGCCAAACCCCTTCAAGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATGTTGTTTGCTCATGCCTTCAGAAAAGGGACATCCATCGACATGACAGTTGGGGGT
AACAGGAAAACAGTATTTTTCATCCGGCTTTTTATTTTGCATCAACTCCTTCAAGAGGAA
GGCACAACACTCAATAATAATCGCAGGAACGGGTGTCTGCAAGGGGTGAGGGGCTGAGTT
AACGAGATCCAGATTTGGAACTTGCTGATGGTATAACTTTCTAACTTGATGGAAGGATAA
GGATGCTGAATAGAGATGAATGGCGAGCCAGGCCTTAAATAGGATTTCTCTCTTTCTGGT
TTTGAAGGGAAGTCAGAGAGCAGCCAATTTAAGGTGTTATTTCAGAAGTGAGTCCATGCC
ATGTTCTAGGTAGGAAGGACACCAGGCAGGCAGGTGGCAGGCTGACGTCAAAAAAATCCT
GAAATTGGAAGAAGCTACATCTTGTCTGTGGGTCATTCCACTTTGACTGCTTCTCCATAC
ACAGCCAAACCCCTTCAAGGAAAAAAAAAAA

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-211, gnl|bosTau2|chr13 (12016575-12016359)
               

               
               1-211, gnl|Hg17|chr10 (24699431-24699963)
               


               
               218-511, gnl|bosTau2|chr13 (12016376-12016090)
               

               
               218-511, gnl|canFam2|chr2 (11946650-11946298)
               

               
               218-511, gnl|echTel1|scaffold_203464 (1431-1091)
               

               
               218-511, gnl|hg17|chr10 (24699867-24700227)
               

               
               218-511, gnl|Hg17|chr10 (24699925-24700261)
               

               
               218-511, gnl|loxAfr1|scaffold_26862 (12313-12670)
               

               
               218-511, gnl|panTro1|chr8 (24951768-24952128)
               

               
               218-511, gnl|rheMac2|chr9 (24561449-24561809)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-211, gnl|bosTau2|chr13 (12016575-12016359)
               

               
               1-211, gnl|Hg17|chr10 (24699431-24699963)
               


               
               218-511, gnl|bosTau2|chr13 (12016376-12016090)
               

               
               218-511, gnl|canFam2|chr2 (11946650-11946298)
               

               
               218-511, gnl|echTel1|scaffold_203464 (1431-1091)
               

               
               218-511, gnl|hg17|chr10 (24699867-24700227)
               

               
               218-511, gnl|Hg17|chr10 (24699925-24700261)
               

               
               218-511, gnl|loxAfr1|scaffold_26862 (12313-12670)
               

               
               218-511, gnl|panTro1|chr8 (24951768-24952128)
               

               
               218-511, gnl|rheMac2|chr9 (24561449-24561809)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	1-211, gnl\|bosTau2\|chr13 (12016575-12016359)
	1-211, gnl\|Hg17\|chr10 (24699431-24699963)

	218-511, gnl\|bosTau2\|chr13 (12016376-12016090)
	218-511, gnl\|canFam2\|chr2 (11946650-11946298)
	218-511, gnl\|echTel1\|scaffold_203464 (1431-1091)
	218-511, gnl\|hg17\|chr10 (24699867-24700227)
	218-511, gnl\|Hg17\|chr10 (24699925-24700261)
	218-511, gnl\|loxAfr1\|scaffold_26862 (12313-12670)
	218-511, gnl\|panTro1\|chr8 (24951768-24952128)
	218-511, gnl\|rheMac2\|chr9 (24561449-24561809)