Non-Coding RNA Search

rova002_g20.y1

Sequence:


               
               TGGCTCTTAACCAATAAATAGGTGATGGTGAGCTCATGAAACATTTTTTAAAAAAGAAGA
ATGACAATCATGTTTGTATTTCAGTGAAATGTCTCTGGCAACTGTAGGAAAGCTAATATT
ATCTAACATTTATTGAGTACTTAGAATATGCTGAGACCTGTGCTAAGAATTTTGCCTGTG
TCATCTGATGTTGCCCTGACAAATACTCTGTCAAAGAGATACTATTATTTCAATACTTTT
TTTTTTTAACTGAGGAAGAAATTAAGACTTAGAAAAGGCATGCGTCTAAGAGTCAGGAAG
AAAGTTTATGGTTAATGTTACTGGAATTGTAGAATTTCCAGAATTACAAGTAATTCTGGA
AAAACGTTTGGAAAAAGAAACCTAGCCCTTGAAAAAGAGTTAAAGTGAGGCAGTTTGATT
CCCTTTTCTCTGGGGGAATAGTGAGACTTAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTCTTAACCAATAAATAGGTGATGGTGAGCTCATGAAACATTTTTTAAAAAAGAAGA
ATGACAATCATGTTTGTATTTCAGTGAAATGTCTCTGGCAACTGTAGGAAAGCTAATATT
ATCTAACATTTATTGAGTACTTAGAATATGCTGAGACCTGTGCTAAGAATTTTGCCTGTG
TCATCTGATGTTGCCCTGACAAATACTCTGTCAAAGAGATACTATTATTTCAATACTTTT
TTTTTTTAACTGAGGAAGAAATTAAGACTTAGAAAAGGCATGCGTCTAAGAGTCAGGAAG
AAAGTTTATGGTTAATGTTACTGGAATTGTAGAATTTCCAGAATTACAAGTAATTCTGGA
AAAACGTTTGGAAAAAGAAACCTAGCCCTTGAAAAAGAGTTAAAGTGAGGCAGTTTGATT
CCCTTTTCTCTGGGGGAATAGTGAGACTTAGTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-378, + strand, RNAz p=0.992804

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-378, + strand, RNAz p=0.992804

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-453, gnl|bosTau2|chr2 (35610314-35609868)
               

               
               1-453, gnl|Hg17|chr2 (145088243-145087783)
               

               
               1-453, gnl|Mm7|chr2 (45097334-45096910)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-453, gnl|bosTau2|chr2 (35610314-35609868)
               

               
               1-453, gnl|Hg17|chr2 (145088243-145087783)
               

               
               1-453, gnl|Mm7|chr2 (45097334-45096910)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	1-453, gnl\|bosTau2\|chr2 (35610314-35609868)
	1-453, gnl\|Hg17\|chr2 (145088243-145087783)
	1-453, gnl\|Mm7\|chr2 (45097334-45096910)