Non-Coding RNA Search

rova018_i11.y1

Sequence:


               
               GTTTGCTTTCTTTGAATACACCACTGGTGATAGGACTTTTCCAATCACCTGACTTGAGTA
GAGAATTGGATAAAGGAATGCTTTACGTTACTGAGCTTTAATGTAGCAGGGTGTCAGTTT
GAAATAATGGAAGGCTCATTGCCAATGGTTTATTTTATTAACTAATTTCCCAAGATAGAT
TCTTTCACCTCTGACCATCTAAAGCTAACTTTGCGCAGTTAACACAAACCTGAGGAAGCC
GTACAAATTACACCTGCTGGTCTCAGAAGCACCTAAGTTTGCTTTTCCAATGTTGTAACG
AAGTACCTTTCATCCCTTTATAGGACTCCGTTATAGGCTATTGCAGTAATTTAAAACCTA
TGTACCTAGACTCCTGACCTTGTTATAACATCACTTTGTAATTCTCAAAATACTTGGCTC
TTGAAGATTTTCTTAGCACTAGCCATGTATTCTTAAAGAGCCCAGATGATTTGTCTTTGG
TGTTATATTACCCATATCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGCTTTCTTTGAATACACCACTGGTGATAGGACTTTTCCAATCACCTGACTTGAGTA
GAGAATTGGATAAAGGAATGCTTTACGTTACTGAGCTTTAATGTAGCAGGGTGTCAGTTT
GAAATAATGGAAGGCTCATTGCCAATGGTTTATTTTATTAACTAATTTCCCAAGATAGAT
TCTTTCACCTCTGACCATCTAAAGCTAACTTTGCGCAGTTAACACAAACCTGAGGAAGCC
GTACAAATTACACCTGCTGGTCTCAGAAGCACCTAAGTTTGCTTTTCCAATGTTGTAACG
AAGTACCTTTCATCCCTTTATAGGACTCCGTTATAGGCTATTGCAGTAATTTAAAACCTA
TGTACCTAGACTCCTGACCTTGTTATAACATCACTTTGTAATTCTCAAAATACTTGGCTC
TTGAAGATTTTCTTAGCACTAGCCATGTATTCTTAAAGAGCCCAGATGATTTGTCTTTGG
TGTTATATTACCCATATCTCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               274-502, - strand, RNAz p=0.88432

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               274-502, - strand, RNAz p=0.88432

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-502, gnl|bosTau2|chr26 (27793684-27793195)
               

               
               2-502, gnl|Hg17|chr10 (124921448-124921937)
               

               
               2-502, gnl|Mm7|chr7 (127931621-127932078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-502, gnl|bosTau2|chr26 (27793684-27793195)
               

               
               2-502, gnl|Hg17|chr10 (124921448-124921937)
               

               
               2-502, gnl|Mm7|chr7 (127931621-127932078)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	2-502, gnl\|bosTau2\|chr26 (27793684-27793195)
	2-502, gnl\|Hg17\|chr10 (124921448-124921937)
	2-502, gnl\|Mm7\|chr7 (127931621-127932078)