Non-Coding RNA Search

rova018_k5.y1

Sequence:


               
               TCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACCTGAGCCTCTAGGGATAAATAAA
CAGTGAGAGTAACTCAACTGAGAAAGATATGTTATGGGCATCCCACAGTAATCACCTATC
TTTTAAAAAGAAACAACATTTCTTGATATCCCAGAGGTGTCTGGCACTACACAAAGTGAT
ACGAGCATGAGATTGCAGAACATAATGTTTGGGAACATAGTGTTCCCCTGGGGATTTAAA
AATTAATGCAGATCCAAAACCATTAAAAAATACAGAGGTTGGTTGTAATAAATTATAGGA
AAACAAAGTGAAAAAAGTGTGGGGGCAAAAGTCCCAAGCACAGTGATAAACCAGGGAACG
TGAAAGCAGAATATGATGAAGCCAATTAAGCTCGGGAGAACCCAGACTTGCAGTATGGGC
AGAATACAAGATACCCTGTGAAGTCAATTCTGCAGACTCGGTTACTTATCCATACACCAA
CCAAAAATAAATACCTGTTTCTGATGGGCTACTGGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACCTGAGCCTCTAGGGATAAATAAA
CAGTGAGAGTAACTCAACTGAGAAAGATATGTTATGGGCATCCCACAGTAATCACCTATC
TTTTAAAAAGAAACAACATTTCTTGATATCCCAGAGGTGTCTGGCACTACACAAAGTGAT
ACGAGCATGAGATTGCAGAACATAATGTTTGGGAACATAGTGTTCCCCTGGGGATTTAAA
AATTAATGCAGATCCAAAACCATTAAAAAATACAGAGGTTGGTTGTAATAAATTATAGGA
AAACAAAGTGAAAAAAGTGTGGGGGCAAAAGTCCCAAGCACAGTGATAAACCAGGGAACG
TGAAAGCAGAATATGATGAAGCCAATTAAGCTCGGGAGAACCCAGACTTGCAGTATGGGC
AGAATACAAGATACCCTGTGAAGTCAATTCTGCAGACTCGGTTACTTATCCATACACCAA
CCAAAAATAAATACCTGTTTCTGATGGGCTACTGGCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               71-243, - strand, RNAz p=0.977705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-243, - strand, RNAz p=0.977705

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               31-519, gnl|bosTau2|chr4 (51420135-51419642)
               

               
               31-519, gnl|canFam2|chr14 (8840802-8840425)
               

               
               31-519, gnl|dasNov1|scaffold_9149 (10923-10593)
               

               
               31-519, gnl|echTel1|scaffold_312125 (47055-46638)
               

               
               31-519, gnl|hg17|chr7 (130353374-130353753)
               

               
               31-519, gnl|Hg17|chr7 (130353864-130353373)
               

               
               31-519, gnl|loxAfr1|scaffold_4422 (64691-65073)
               

               
               31-519, gnl|mm7|chr6 (31236547-31236964)
               

               
               31-519, gnl|Mm7|chr6 (31237100-31236550)
               

               
               31-519, gnl|oryCun1|scaffold_162391 (16138-16510)
               

               
               31-519, gnl|panTro1|chr6_random (8426147-8425768)
               

               
               31-519, gnl|rheMac2|chr3 (168594736-168595166)
               

               
               31-519, gnl|rn3|chr4 (58653264-58653670)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-519, gnl|bosTau2|chr4 (51420135-51419642)
               

               
               31-519, gnl|canFam2|chr14 (8840802-8840425)
               

               
               31-519, gnl|dasNov1|scaffold_9149 (10923-10593)
               

               
               31-519, gnl|echTel1|scaffold_312125 (47055-46638)
               

               
               31-519, gnl|hg17|chr7 (130353374-130353753)
               

               
               31-519, gnl|Hg17|chr7 (130353864-130353373)
               

               
               31-519, gnl|loxAfr1|scaffold_4422 (64691-65073)
               

               
               31-519, gnl|mm7|chr6 (31236547-31236964)
               

               
               31-519, gnl|Mm7|chr6 (31237100-31236550)
               

               
               31-519, gnl|oryCun1|scaffold_162391 (16138-16510)
               

               
               31-519, gnl|panTro1|chr6_random (8426147-8425768)
               

               
               31-519, gnl|rheMac2|chr3 (168594736-168595166)
               

               
               31-519, gnl|rn3|chr4 (58653264-58653670)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	31-519, gnl\|bosTau2\|chr4 (51420135-51419642)
	31-519, gnl\|canFam2\|chr14 (8840802-8840425)
	31-519, gnl\|dasNov1\|scaffold_9149 (10923-10593)
	31-519, gnl\|echTel1\|scaffold_312125 (47055-46638)
	31-519, gnl\|hg17\|chr7 (130353374-130353753)
	31-519, gnl\|Hg17\|chr7 (130353864-130353373)
	31-519, gnl\|loxAfr1\|scaffold_4422 (64691-65073)
	31-519, gnl\|mm7\|chr6 (31236547-31236964)
	31-519, gnl\|Mm7\|chr6 (31237100-31236550)
	31-519, gnl\|oryCun1\|scaffold_162391 (16138-16510)
	31-519, gnl\|panTro1\|chr6_random (8426147-8425768)
	31-519, gnl\|rheMac2\|chr3 (168594736-168595166)
	31-519, gnl\|rn3\|chr4 (58653264-58653670)