Non-Coding RNA Search

rova020_h17.y1

Sequence:


               
               TGCCTATTTCAGACTTCTGACTTCAGAATGCTTCCCTCATGATTTTCCTTGGGATGAAAG
CCCAAAGATCAAAACACTGCCTAACACCAAGTTATTCTATAAGCAGCACTCCCAGTCACC
CTCCTGCCACTTCTCTTTGCCAGAAGAAACAAAGGCCGGACGCTTTCATGCAACCAATGT
GAATTTTGACAAGGAGGCAAAATGATACAAAGCCAACAAGTGCCAGAAGAATAATGCAAG
GAACCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCTATTTCAGACTTCTGACTTCAGAATGCTTCCCTCATGATTTTCCTTGGGATGAAAG
CCCAAAGATCAAAACACTGCCTAACACCAAGTTATTCTATAAGCAGCACTCCCAGTCACC
CTCCTGCCACTTCTCTTTGCCAGAAGAAACAAAGGCCGGACGCTTTCATGCAACCAATGT
GAATTTTGACAAGGAGGCAAAATGATACAAAGCCAACAAGTGCCAGAAGAATAATGCAAG
GAACCCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               97-240, + strand, RNAz p=0.743351

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               97-240, + strand, RNAz p=0.743351

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               31-249, gnl|bosTau2|chr12 (35306055-35306275)
               

               
               31-249, gnl|canFam2|chr22 (46748325-46748856)
               

               
               31-249, gnl|dasNov1|scaffold_22579 (2615-2092)
               

               
               31-249, gnl|echTel1|scaffold_218748 (4024-3457)
               

               
               31-249, gnl|hg17|chr13 (92257664-92258209)
               

               
               31-249, gnl|Hg17|chr13 (92257968-92257749)
               

               
               31-249, gnl|mm7|chr14 (110846156-110846641)
               

               
               31-249, gnl|Mm7|chr14 (110846462-110846241)
               

               
               31-249, gnl|monDom2|scaffold_11 (60893253-60892692)
               

               
               31-249, gnl|oryCun1|scaffold_202595 (128341-128841)
               

               
               31-249, gnl|panTro1|chr14 (75229177-75229718)
               

               
               31-249, gnl|rheMac2|chr17 (73219602-73220143)
               

               
               31-249, gnl|rn3|chr15 (101291953-101292439)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-249, gnl|bosTau2|chr12 (35306055-35306275)
               

               
               31-249, gnl|canFam2|chr22 (46748325-46748856)
               

               
               31-249, gnl|dasNov1|scaffold_22579 (2615-2092)
               

               
               31-249, gnl|echTel1|scaffold_218748 (4024-3457)
               

               
               31-249, gnl|hg17|chr13 (92257664-92258209)
               

               
               31-249, gnl|Hg17|chr13 (92257968-92257749)
               

               
               31-249, gnl|mm7|chr14 (110846156-110846641)
               

               
               31-249, gnl|Mm7|chr14 (110846462-110846241)
               

               
               31-249, gnl|monDom2|scaffold_11 (60893253-60892692)
               

               
               31-249, gnl|oryCun1|scaffold_202595 (128341-128841)
               

               
               31-249, gnl|panTro1|chr14 (75229177-75229718)
               

               
               31-249, gnl|rheMac2|chr17 (73219602-73220143)
               

               
               31-249, gnl|rn3|chr15 (101291953-101292439)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	31-249, gnl\|bosTau2\|chr12 (35306055-35306275)
	31-249, gnl\|canFam2\|chr22 (46748325-46748856)
	31-249, gnl\|dasNov1\|scaffold_22579 (2615-2092)
	31-249, gnl\|echTel1\|scaffold_218748 (4024-3457)
	31-249, gnl\|hg17\|chr13 (92257664-92258209)
	31-249, gnl\|Hg17\|chr13 (92257968-92257749)
	31-249, gnl\|mm7\|chr14 (110846156-110846641)
	31-249, gnl\|Mm7\|chr14 (110846462-110846241)
	31-249, gnl\|monDom2\|scaffold_11 (60893253-60892692)
	31-249, gnl\|oryCun1\|scaffold_202595 (128341-128841)
	31-249, gnl\|panTro1\|chr14 (75229177-75229718)
	31-249, gnl\|rheMac2\|chr17 (73219602-73220143)
	31-249, gnl\|rn3\|chr15 (101291953-101292439)