Non-Coding RNA Search

rova021_d13.y1

Sequence:


               
               TAAACAGTAAGGGTTATCTCTTAAAGTTCTTGGGAATCCTGGCTGAAACATGTGTAAGGC
AAAGTTGATTGGCTATGTAGACTTCTCCTTACTTCTCCCAAAGCCTTGTGAGAAATGGAA
AGCTCATCTGAAAATACTAGTTTATAGTATGGTATCTTTGAAAGAGACAAATGTACAAGG
AATTAATACAAACATAAATGTTCAGggagttcccattgtggctcagagggttttgaacag
actagtatccatgaagatgcgggttcaattcctggcc

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACAGTAAGGGTTATCTCTTAAAGTTCTTGGGAATCCTGGCTGAAACATGTGTAAGGC
AAAGTTGATTGGCTATGTAGACTTCTCCTTACTTCTCCCAAAGCCTTGTGAGAAATGGAA
AGCTCATCTGAAAATACTAGTTTATAGTATGGTATCTTTGAAAGAGACAAATGTACAAGG
AATTAATACAAACATAAATGTTCAGggagttcccattgtggctcagagggttttgaacag
actagtatccatgaagatgcgggttcaattcctggcc

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               56-204, gnl|bosTau2|chr1 (23563377-23563521)
               

               
               56-204, gnl|canFam2|chr33 (9434809-9435240)
               

               
               56-204, gnl|dasNov1|scaffold_1017 (157463-157020)
               

               
               56-204, gnl|echTel1|scaffold_314634 (42834-43256)
               

               
               56-204, gnl|hg17|chr3 (101040946-101041405)
               

               
               56-204, gnl|Hg17|chr3 (101041106-101041261)
               

               
               56-204, gnl|loxAfr1|scaffold_1536 (10611-10179)
               

               
               56-204, gnl|oryCun1|scaffold_197167 (18029-17601)
               

               
               56-204, gnl|panTro1|chr2 (102254424-102254883)
               

               
               56-204, gnl|rheMac2|chr2 (20035107-20035554)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-204, gnl|bosTau2|chr1 (23563377-23563521)
               

               
               56-204, gnl|canFam2|chr33 (9434809-9435240)
               

               
               56-204, gnl|dasNov1|scaffold_1017 (157463-157020)
               

               
               56-204, gnl|echTel1|scaffold_314634 (42834-43256)
               

               
               56-204, gnl|hg17|chr3 (101040946-101041405)
               

               
               56-204, gnl|Hg17|chr3 (101041106-101041261)
               

               
               56-204, gnl|loxAfr1|scaffold_1536 (10611-10179)
               

               
               56-204, gnl|oryCun1|scaffold_197167 (18029-17601)
               

               
               56-204, gnl|panTro1|chr2 (102254424-102254883)
               

               
               56-204, gnl|rheMac2|chr2 (20035107-20035554)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ova (0.129132)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	56-204, gnl\|bosTau2\|chr1 (23563377-23563521)
	56-204, gnl\|canFam2\|chr33 (9434809-9435240)
	56-204, gnl\|dasNov1\|scaffold_1017 (157463-157020)
	56-204, gnl\|echTel1\|scaffold_314634 (42834-43256)
	56-204, gnl\|hg17\|chr3 (101040946-101041405)
	56-204, gnl\|Hg17\|chr3 (101041106-101041261)
	56-204, gnl\|loxAfr1\|scaffold_1536 (10611-10179)
	56-204, gnl\|oryCun1\|scaffold_197167 (18029-17601)
	56-204, gnl\|panTro1\|chr2 (102254424-102254883)
	56-204, gnl\|rheMac2\|chr2 (20035107-20035554)