Non-Coding RNA Search

rova023_m17.y1

Sequence:


               
               TATACGGTCACTTTCCTTAAGGACTATTTTTACTGACAGGTGAAAAGACTTACATGTTGT
ATTGGTTTTCTTAAACTGGCTGGTATGGAAGCTTCAGGTTAATCTAAAAAGCAAACCAAC
CAACAGACAGACAAAAAAAGCAAGAAAAACAAATAAAAAATCTAGGGGAAAACAAAACAA
AACAAAACAAAAAGCGGAAACAAATCCCAACGGCTAAGCCATTTGAAGTGGGAAAGGATA
AAACATAGGCTTCATATCATGGGGAGAGATTTTCTCATCCTTTTTTTTTTCTTTTGTCTC
CAAGGAATTCTTCATTAGACTCAATTTAAGCCTTGAGTTTGAGGTTTTATATTCTCTATT
GGTAAGCACACCTATTAAAAAGCAATGTATTCACATAAACTCCCTGGCATCAGCAGGCTC
TGTGTATTCACCGTTAGCAGTGGATTCCATGCCAGGAGAACCTGACTCCTGGTGCAAAAG
GATTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATACGGTCACTTTCCTTAAGGACTATTTTTACTGACAGGTGAAAAGACTTACATGTTGT
ATTGGTTTTCTTAAACTGGCTGGTATGGAAGCTTCAGGTTAATCTAAAAAGCAAACCAAC
CAACAGACAGACAAAAAAAGCAAGAAAAACAAATAAAAAATCTAGGGGAAAACAAAACAA
AACAAAACAAAAAGCGGAAACAAATCCCAACGGCTAAGCCATTTGAAGTGGGAAAGGATA
AAACATAGGCTTCATATCATGGGGAGAGATTTTCTCATCCTTTTTTTTTTCTTTTGTCTC
CAAGGAATTCTTCATTAGACTCAATTTAAGCCTTGAGTTTGAGGTTTTATATTCTCTATT
GGTAAGCACACCTATTAAAAAGCAATGTATTCACATAAACTCCCTGGCATCAGCAGGCTC
TGTGTATTCACCGTTAGCAGTGGATTCCATGCCAGGAGAACCTGACTCCTGGTGCAAAAG
GATTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               390-495, - strand, RNAz p=0.979051

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               390-495, - strand, RNAz p=0.979051

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-147, gnl|bosTau2|chr3 (37284212-37284362)
               

               
               1-147, gnl|canFam2|chr6 (55544678-55544351)
               

               
               1-147, gnl|dasNov1|scaffold_30207 (12233-11928)
               

               
               1-147, gnl|echTel1|scaffold_318984 (43611-43925)
               

               
               1-147, gnl|hg17|chr1 (97323661-97323988)
               

               
               1-147, gnl|Hg17|chr1 (97323880-97323685)
               

               
               1-147, gnl|loxAfr1|scaffold_1857 (38375-38695)
               

               
               1-147, gnl|mm7|chr3 (119133937-119133658)
               

               
               1-147, gnl|oryCun1|scaffold_208730 (80810-81129)
               

               
               1-147, gnl|panTro1|chr1_random (83168829-83168502)
               

               
               1-147, gnl|rheMac2|chr1 (100203388-100203729)
               

               
               1-147, gnl|rn3|chr2 (215700769-215700469)
               


               
               169-495, gnl|bosTau2|chr3 (37284430-37284759)
               

               
               169-495, gnl|Hg17|chr1 (97323683-97323355)
               

               
               169-495, gnl|Mm7|chr3 (119133929-119134248)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-147, gnl|bosTau2|chr3 (37284212-37284362)
               

               
               1-147, gnl|canFam2|chr6 (55544678-55544351)
               

               
               1-147, gnl|dasNov1|scaffold_30207 (12233-11928)
               

               
               1-147, gnl|echTel1|scaffold_318984 (43611-43925)
               

               
               1-147, gnl|hg17|chr1 (97323661-97323988)
               

               
               1-147, gnl|Hg17|chr1 (97323880-97323685)
               

               
               1-147, gnl|loxAfr1|scaffold_1857 (38375-38695)
               

               
               1-147, gnl|mm7|chr3 (119133937-119133658)
               

               
               1-147, gnl|oryCun1|scaffold_208730 (80810-81129)
               

               
               1-147, gnl|panTro1|chr1_random (83168829-83168502)
               

               
               1-147, gnl|rheMac2|chr1 (100203388-100203729)
               

               
               1-147, gnl|rn3|chr2 (215700769-215700469)
               


               
               169-495, gnl|bosTau2|chr3 (37284430-37284759)
               

               
               169-495, gnl|Hg17|chr1 (97323683-97323355)
               

               
               169-495, gnl|Mm7|chr3 (119133929-119134248)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	1-147, gnl\|bosTau2\|chr3 (37284212-37284362)
	1-147, gnl\|canFam2\|chr6 (55544678-55544351)
	1-147, gnl\|dasNov1\|scaffold_30207 (12233-11928)
	1-147, gnl\|echTel1\|scaffold_318984 (43611-43925)
	1-147, gnl\|hg17\|chr1 (97323661-97323988)
	1-147, gnl\|Hg17\|chr1 (97323880-97323685)
	1-147, gnl\|loxAfr1\|scaffold_1857 (38375-38695)
	1-147, gnl\|mm7\|chr3 (119133937-119133658)
	1-147, gnl\|oryCun1\|scaffold_208730 (80810-81129)
	1-147, gnl\|panTro1\|chr1_random (83168829-83168502)
	1-147, gnl\|rheMac2\|chr1 (100203388-100203729)
	1-147, gnl\|rn3\|chr2 (215700769-215700469)

	169-495, gnl\|bosTau2\|chr3 (37284430-37284759)
	169-495, gnl\|Hg17\|chr1 (97323683-97323355)
	169-495, gnl\|Mm7\|chr3 (119133929-119134248)