Non-Coding RNA Search

rova026_p16.y1

Sequence:


               
               CCACTCTACATTTTTAATCCCAGCCCAGGACTATTTGCTGTGATGCACCCTCTGACCTAT
GCAGAAACCTTGATCGATTACCACCTGTGCTCTCACCCCAAGTACAGGTTCACCAAAGAG
TCCCACTCTGGATCCAGCATTCCTCTCACCCAGAAGCAGTTTCTCCACCACACGGACATC
ATTCCCGGAGTGATGACCTGGAAGAAGTTCCAGTCCCTGGCCCTCTCATCCCTGCCCGAA
ACCAGTAAGATAGAGACGTCACAGAGCTGTGATTCCTTCAATTTGGTCATGCTTCCTGTA
AATGTCCCTGCCGTTCTTGACGCCTTACCAGAAGAAGACAAGATGGAGACATTTGAACGT
GAGCTCTGTGAACAGAGTGTAGAAATTATGCTAACTCCAGAAATGATCGAAGTGGAGTTC
CCTATGTTGGACTACAAGGACACCAAGAAGGAGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCTACATTTTTAATCCCAGCCCAGGACTATTTGCTGTGATGCACCCTCTGACCTAT
GCAGAAACCTTGATCGATTACCACCTGTGCTCTCACCCCAAGTACAGGTTCACCAAAGAG
TCCCACTCTGGATCCAGCATTCCTCTCACCCAGAAGCAGTTTCTCCACCACACGGACATC
ATTCCCGGAGTGATGACCTGGAAGAAGTTCCAGTCCCTGGCCCTCTCATCCCTGCCCGAA
ACCAGTAAGATAGAGACGTCACAGAGCTGTGATTCCTTCAATTTGGTCATGCTTCCTGTA
AATGTCCCTGCCGTTCTTGACGCCTTACCAGAAGAAGACAAGATGGAGACATTTGAACGT
GAGCTCTGTGAACAGAGTGTAGAAATTATGCTAACTCCAGAAATGATCGAAGTGGAGTTC
CCTATGTTGGACTACAAGGACACCAAGAAGGAGAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55608785|ref|XP_515763.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55608785|ref|XP_515763.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               16-175, gnl|bosTau2|chr2 (44083786-44083627)
               

               
               16-175, gnl|canFam2|chr19 (33431949-33431689)
               

               
               16-175, gnl|dasNov1|scaffold_7647 (1693-1933)
               

               
               16-175, gnl|echTel1|scaffold_194142 (248-488)
               

               
               16-175, gnl|hg17|chr2 (120112020-120112254)
               

               
               16-175, gnl|Hg17|chr2 (120112065-120112224)
               

               
               16-175, gnl|mm7|chr1 (119793497-119793267)
               

               
               16-175, gnl|Mm7|chr1 (119793451-119793292)
               

               
               16-175, gnl|monDom2|scaffold_2 (9982486-9982248)
               

               
               16-175, gnl|panTro1|chr13 (6130088-6130322)
               

               
               16-175, gnl|rheMac2|chr13 (125810030-125810264)
               

               
               16-175, gnl|rn3|chr13 (32726114-32725887)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-175, gnl|bosTau2|chr2 (44083786-44083627)
               

               
               16-175, gnl|canFam2|chr19 (33431949-33431689)
               

               
               16-175, gnl|dasNov1|scaffold_7647 (1693-1933)
               

               
               16-175, gnl|echTel1|scaffold_194142 (248-488)
               

               
               16-175, gnl|hg17|chr2 (120112020-120112254)
               

               
               16-175, gnl|Hg17|chr2 (120112065-120112224)
               

               
               16-175, gnl|mm7|chr1 (119793497-119793267)
               

               
               16-175, gnl|Mm7|chr1 (119793451-119793292)
               

               
               16-175, gnl|monDom2|scaffold_2 (9982486-9982248)
               

               
               16-175, gnl|panTro1|chr13 (6130088-6130322)
               

               
               16-175, gnl|rheMac2|chr13 (125810030-125810264)
               

               
               16-175, gnl|rn3|chr13 (32726114-32725887)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ova (0.129132)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	16-175, gnl\|bosTau2\|chr2 (44083786-44083627)
	16-175, gnl\|canFam2\|chr19 (33431949-33431689)
	16-175, gnl\|dasNov1\|scaffold_7647 (1693-1933)
	16-175, gnl\|echTel1\|scaffold_194142 (248-488)
	16-175, gnl\|hg17\|chr2 (120112020-120112254)
	16-175, gnl\|Hg17\|chr2 (120112065-120112224)
	16-175, gnl\|mm7\|chr1 (119793497-119793267)
	16-175, gnl\|Mm7\|chr1 (119793451-119793292)
	16-175, gnl\|monDom2\|scaffold_2 (9982486-9982248)
	16-175, gnl\|panTro1\|chr13 (6130088-6130322)
	16-175, gnl\|rheMac2\|chr13 (125810030-125810264)
	16-175, gnl\|rn3\|chr13 (32726114-32725887)